Variant report

Variant	rs10840083
Chromosome Location	chr11:8608636-8608637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8606930..8609872-chr11:8703957..8706070,2	K562	blood:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction
ENSG00000200983	Chromatin interaction

Extended variants
information (count: 146 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10160430	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10160804	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10160805	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10444244	0.96[CEU][hapmap];0.81[CHB][hapmap]
rs10444316	0.96[CEU][hapmap];0.81[CHB][hapmap]
rs10743072	0.88[EUR][1000 genomes]
rs10743074	0.86[EUR][1000 genomes]
rs10743076	0.96[CEU][hapmap];0.81[CHB][hapmap]
rs10743078	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10743079	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10743080	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10743081	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10743082	0.85[CEU][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10769905	0.82[CEU][hapmap]
rs10769907	0.85[EUR][1000 genomes]
rs10769908	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs10769910	0.96[CEU][hapmap];0.81[CHB][hapmap];0.88[EUR][1000 genomes]
rs10769915	0.96[CEU][hapmap];0.86[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10769916	0.96[CEU][hapmap];0.86[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10769918	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769919	0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10769920	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10769921	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769922	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769923	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10769924	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10769925	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769926	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769927	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10840047	0.96[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs10840051	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10840055	0.87[EUR][1000 genomes]
rs10840056	0.96[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs10840058	0.88[EUR][1000 genomes]
rs10840060	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs10840062	0.96[CEU][hapmap];0.86[CHB][hapmap]
rs10840063	0.92[CEU][hapmap];0.81[CHB][hapmap]
rs10840065	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs10840072	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10840077	0.96[CEU][hapmap];0.86[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10840079	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10840080	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10840081	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10840084	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10840085	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10840087	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10840089	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10840091	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10840103	0.82[CEU][hapmap]
rs11041924	0.83[EUR][1000 genomes]
rs11041929	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11041950	0.91[CEU][hapmap]
rs11041962	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11041974	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11041978	0.96[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap]
rs11041982	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11041983	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11041985	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11041990	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11041993	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11041994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11041995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11041997	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11041999	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11042002	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11493772	0.87[EUR][1000 genomes]
rs12226478	0.92[ASN][1000 genomes]
rs12277932	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12576736	0.86[EUR][1000 genomes]
rs12785939	0.90[ASN][1000 genomes]
rs12805671	0.90[ASN][1000 genomes]
rs12806736	0.85[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs1374262	0.96[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs1374263	0.82[ASN][1000 genomes]
rs1446462	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1446463	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1446464	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.85[ASN][1000 genomes]
rs1900272	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs1900273	0.88[CEU][hapmap];0.97[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs2015629	0.85[EUR][1000 genomes]
rs2028882	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs2044463	0.85[EUR][1000 genomes]
rs2289921	0.96[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs2289923	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2311391	0.81[CEU][hapmap]
rs2871753	0.96[CEU][hapmap];0.81[CHB][hapmap];0.88[EUR][1000 genomes]
rs3969875	0.84[EUR][1000 genomes]
rs4131072	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4244804	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4244806	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4344491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4405311	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4418812	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4475924	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4520598	0.95[ASN][1000 genomes]
rs4612809	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4620720	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4758067	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[ASN][1000 genomes]
rs4929929	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4929941	0.85[CEU][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4929942	0.96[CEU][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4929943	1.00[CEU][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4929944	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4929945	0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4929949	0.91[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4929950	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6484485	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6578968	0.87[EUR][1000 genomes]
rs6578969	0.88[EUR][1000 genomes]
rs7101471	0.96[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs7108993	0.82[CEU][hapmap]
rs7112153	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs7120065	0.86[EUR][1000 genomes]
rs7126013	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7126934	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7127684	0.96[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs7129357	0.84[ASN][1000 genomes]
rs725502	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap]
rs726007	0.85[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]
rs749263	0.82[CEU][hapmap]
rs7924753	0.88[EUR][1000 genomes]
rs7929120	0.83[CEU][hapmap];0.90[ASN][1000 genomes]
rs7931604	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7934396	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7935708	0.87[EUR][1000 genomes]
rs7939731	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap]
rs7945659	0.81[CEU][hapmap];0.81[CHB][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs7947670	0.95[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs7949017	0.88[EUR][1000 genomes]
rs9284150	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[ASN][1000 genomes]
rs9284151	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9300088	0.92[ASN][1000 genomes]
rs9300089	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[YRI][hapmap];0.94[ASN][1000 genomes]
rs9300090	0.92[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9300091	0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9300092	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs9300093	0.96[CEU][hapmap]
rs9300094	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs935370	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9705083	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9705253	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9736791	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9737312	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9737401	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs10840083	STK33	cis	cerebellum	SCAN
rs10840083	RPL27A	cis	cerebellum	SCAN
rs10840083	TUB	cis	parietal	SCAN
rs10840083	OVCH2	cis	cerebellum	SCAN
rs10840083	STK33	cis	lymphoblastoid	seeQTL
rs10840083	SNORA45	cis	parietal	SCAN
rs10840083	STK33	cis	parietal	SCAN
rs10840083	RPL27A	cis	parietal	SCAN
rs10840083	STK33	cis	Artery Tibial	GTEx
rs10840083	ST5	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8606200-8614800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:8606200-8614800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:8606400-8614600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:8606400-8614600	Weak transcription	Ovary	ovary
5	chr11:8606400-8614800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:8606400-8615000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:8606400-8615000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:8606600-8609200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:8606600-8614800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:8606600-8614800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:8607800-8608800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:8608400-8615000	Weak transcription	Primary hematopoietic stem cells	blood

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