Variant report

Variant	rs9284150
Chromosome Location	chr11:8598973-8598974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10160430	0.80[CEU][hapmap];0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs10160804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160805	0.80[ASN][1000 genomes]
rs10444244	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10444316	0.81[CHB][hapmap]
rs10743076	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10743078	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10743079	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10743080	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10743081	0.89[ASN][1000 genomes]
rs10743082	0.81[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10769908	0.81[CEU][hapmap];0.81[CHB][hapmap];0.80[MEX][hapmap]
rs10769910	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10769915	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10769916	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10769918	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10769919	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10769920	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769921	0.91[ASN][1000 genomes]
rs10769922	0.91[ASN][1000 genomes]
rs10769923	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10769925	0.91[ASN][1000 genomes]
rs10769926	0.91[ASN][1000 genomes]
rs10769927	0.82[ASN][1000 genomes]
rs10769929	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10769938	0.83[MEX][hapmap]
rs10840042	0.81[CEU][hapmap]
rs10840047	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10840051	0.81[CEU][hapmap]
rs10840056	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10840060	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10840062	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs10840063	0.81[CHB][hapmap]
rs10840065	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs10840077	0.81[CEU][hapmap];0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs10840079	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10840081	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840083	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[ASN][1000 genomes]
rs10840084	0.80[CEU][hapmap]
rs10840085	0.97[ASN][1000 genomes]
rs10840089	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10840091	0.86[ASN][1000 genomes]
rs11041929	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11041978	0.81[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.80[MEX][hapmap]
rs11041982	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs11041983	0.81[ASN][1000 genomes]
rs11041985	0.81[ASN][1000 genomes]
rs11041986	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11041990	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11041993	0.97[ASN][1000 genomes]
rs11041994	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11041995	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11041997	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12226478	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12785939	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12805671	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12806736	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap]
rs1374262	0.81[CEU][hapmap]
rs1374263	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1446464	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1900272	0.96[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2028882	0.81[CEU][hapmap];0.81[CHB][hapmap];0.80[MEX][hapmap]
rs2289921	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs2289923	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2311390	0.80[MKK][hapmap];0.83[YRI][hapmap]
rs2871753	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs4131072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244804	0.85[CEU][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.91[ASN][1000 genomes]
rs4244806	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4344491	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4405311	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4475924	0.91[ASN][1000 genomes]
rs4520598	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4612809	0.91[ASN][1000 genomes]
rs4620720	0.91[ASN][1000 genomes]
rs4758067	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4929929	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4929941	1.00[CEU][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4929942	0.81[CEU][hapmap];0.81[CHD][hapmap]
rs4929943	0.85[CEU][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.90[ASN][1000 genomes]
rs4929944	0.90[ASN][1000 genomes]
rs4929945	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4929950	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484485	0.91[ASN][1000 genomes]
rs7101471	0.81[CEU][hapmap]
rs7105027	0.87[YRI][hapmap]
rs7112153	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs7119274	0.82[YRI][hapmap]
rs7126013	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7126934	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs7127684	0.81[CEU][hapmap]
rs7129357	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs725502	0.81[CEU][hapmap];0.81[CHB][hapmap];0.80[MEX][hapmap]
rs726007	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7929120	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7931604	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7939731	0.81[CEU][hapmap];0.81[CHB][hapmap];0.80[MEX][hapmap]
rs7945659	0.81[CHB][hapmap]
rs7947670	0.81[CHB][hapmap]
rs9284151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300088	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9300089	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9300090	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs9300091	0.84[CEU][hapmap];0.85[CHB][hapmap]
rs9300092	0.81[CEU][hapmap];0.81[CHB][hapmap];0.80[MEX][hapmap]
rs9300094	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs935370	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9705083	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9736791	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs9737312	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs9284150	STK33	cis	lymphoblastoid	seeQTL
rs9284150	RPL27A	cis	cerebellum	SCAN
rs9284150	STK33	cis	cerebellum	SCAN
rs9284150	STK33	cis	Artery Tibial	GTEx
rs9284150	SNORA45	cis	parietal	SCAN
rs9284150	ST5	cis	cerebellum	SCAN
rs9284150	ZNF616	trans	parietal	SCAN
rs9284150	HBD	cis	cerebellum	SCAN
rs9284150	STK33	cis	parietal	SCAN
rs9284150	RPL27A	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8595800-8606000	Weak transcription	Left Ventricle	heart
2	chr11:8598600-8599800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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