Variant report

Variant	rs7129564
Chromosome Location	chr11:8450249-8450250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10743072	0.81[EUR][1000 genomes]
rs10769905	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769906	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769907	0.82[EUR][1000 genomes]
rs10769908	0.83[EUR][1000 genomes]
rs10769910	0.81[EUR][1000 genomes]
rs10840030	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10840038	0.94[ASN][1000 genomes]
rs10840040	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10840042	0.97[ASN][1000 genomes]
rs10840047	0.81[EUR][1000 genomes]
rs10840051	0.82[EUR][1000 genomes]
rs10840055	0.81[EUR][1000 genomes]
rs10840056	0.82[EUR][1000 genomes]
rs10840058	0.81[EUR][1000 genomes]
rs10840060	0.81[EUR][1000 genomes]
rs11041900	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11041914	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11493772	0.80[EUR][1000 genomes]
rs12289586	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1374262	0.82[EUR][1000 genomes]
rs1900273	0.82[EUR][1000 genomes]
rs2044463	0.81[EUR][1000 genomes]
rs2289921	0.82[EUR][1000 genomes]
rs2311391	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2871753	0.83[EUR][1000 genomes]
rs4304764	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6578964	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6578968	0.82[EUR][1000 genomes]
rs6578969	0.82[EUR][1000 genomes]
rs7101471	0.81[EUR][1000 genomes]
rs7107739	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7108993	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7112153	0.81[EUR][1000 genomes]
rs7112477	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7118189	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120065	0.81[EUR][1000 genomes]
rs7127684	0.81[EUR][1000 genomes]
rs7128727	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749263	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7924753	0.83[EUR][1000 genomes]
rs7929500	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7935708	0.82[EUR][1000 genomes]
rs7949017	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797209	chr11:8417452-8474015	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8429600-8451200	Weak transcription	Fetal Heart	heart
2	chr11:8446400-8464000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:8447000-8453800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:8447600-8451200	Weak transcription	Right Ventricle	heart
5	chr11:8447800-8451000	Weak transcription	Pancreas	Pancrea
6	chr11:8447800-8456000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:8447800-8464200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:8448000-8461000	Weak transcription	Ovary	ovary
9	chr11:8448200-8455200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:8448200-8456000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:8448800-8454400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:8449200-8452000	Weak transcription	Gastric	stomach

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