Variant report

Variant	rs10840031
Chromosome Location	chr11:8410621-8410622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8410429..8412576-chr11:8424308..8426564,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10769905	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10769906	0.82[ASN][1000 genomes]
rs10840030	0.85[ASN][1000 genomes]
rs10840040	0.82[ASN][1000 genomes]
rs10840042	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs11041897	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11041900	0.84[ASN][1000 genomes]
rs12289586	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs16937956	0.82[ASN][1000 genomes]
rs2123990	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2123991	0.87[ASN][1000 genomes]
rs2311391	0.83[ASN][1000 genomes]
rs2311436	0.98[ASN][1000 genomes]
rs4304764	0.81[ASN][1000 genomes]
rs7108993	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7112477	0.85[ASN][1000 genomes]
rs749263	0.82[CHB][hapmap]
rs7929500	0.82[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10840031	LYVE1	cis	cerebellum	SCAN
rs10840031	OR51V1	cis	cerebellum	SCAN
rs10840031	STK33	cis	cerebellum	SCAN
rs10840031	LMO1	cis	cerebellum	SCAN
rs10840031	CNGA4	cis	cerebellum	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8406600-8410800	Weak transcription	Fetal Kidney	kidney
2	chr11:8407600-8411600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr11:8407600-8414200	Enhancers	Fetal Heart	heart
4	chr11:8408000-8411000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:8408000-8411000	Enhancers	Ovary	ovary
6	chr11:8408200-8415600	Enhancers	Fetal Lung	lung
7	chr11:8408400-8410800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:8408800-8410800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:8408800-8410800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:8409000-8410800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:8409000-8410800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:8409200-8410800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:8409400-8411200	Enhancers	Fetal Thymus	thymus
14	chr11:8409600-8411000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:8409600-8411000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:8409800-8411400	Enhancers	Fetal Brain Male	brain
17	chr11:8409800-8412200	Enhancers	Fetal Stomach	stomach
18	chr11:8410200-8411200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:8410200-8411200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:8410200-8411600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:8410200-8411600	Enhancers	Fetal Muscle Trunk	muscle
22	chr11:8410200-8412000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr11:8410400-8410800	Enhancers	Brain Angular Gyrus	brain
24	chr11:8410400-8410800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr11:8410400-8411000	Enhancers	Esophagus	oesophagus
26	chr11:8410400-8411000	Enhancers	Right Atrium	heart
27	chr11:8410400-8411200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:8410400-8411200	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr11:8410400-8411400	Enhancers	Left Ventricle	heart
30	chr11:8410400-8411600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:8410400-8411800	Enhancers	Rectal Smooth Muscle	rectum
32	chr11:8410400-8412000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:8410400-8412000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:8410400-8412000	Enhancers	Brain Germinal Matrix	brain
35	chr11:8410600-8410800	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:8410600-8410800	Enhancers	Adipose Nuclei	Adipose
37	chr11:8410600-8410800	Flanking Active TSS	Colon Smooth Muscle	Colon
38	chr11:8410600-8411000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:8410600-8411000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:8410600-8411000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr11:8410600-8411000	Enhancers	Gastric	stomach
42	chr11:8410600-8411000	Enhancers	Pancreas	Pancrea
43	chr11:8410600-8411000	Enhancers	Spleen	Spleen
44	chr11:8410600-8411000	Flanking Active TSS	HepG2	liver
45	chr11:8410600-8411000	Enhancers	HMEC	breast
46	chr11:8410600-8411200	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr11:8410600-8411200	Enhancers	Fetal Brain Female	brain
48	chr11:8410600-8411200	Enhancers	Right Ventricle	heart
49	chr11:8410600-8411400	Flanking Active TSS	Brain Substantia Nigra	brain
50	chr11:8410600-8411600	Enhancers	HUES6 Cell Line	embryonic stem cell

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