Variant report

Variant	rs12226287
Chromosome Location	chr11:51361765-51361766
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 190 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11530967	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11535943	0.81[EUR][1000 genomes]
rs11537333	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12224340	0.80[ASN][1000 genomes]
rs1827001	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61109044	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:184 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897533	chr11:50386833-51385894	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1054781	chr11:50417549-51375310	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1036702	chr11:50417549-51377342	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1047636	chr11:50417549-51410459	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1039300	chr11:50430956-51377342	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1812912	chr11:50440270-51372036	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1037622	chr11:50458746-51377342	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2829950	chr11:50461838-51372036	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1042173	chr11:50472064-51377342	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv897545	chr11:50474459-51385894	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv897549	chr11:50522307-51385894	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv897550	chr11:50522307-51412453	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv897553	chr11:50551954-51385894	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv1809768	chr11:50566719-51426645	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv897559	chr11:50609542-51372036	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1046048	chr11:50637245-51564415	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	esv1836242	chr11:50642550-51446535	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv1049789	chr11:50702606-51376963	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv897569	chr11:50730482-51372036	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv897570	chr11:50730482-51385894	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv897571	chr11:50730482-51400197	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv897572	chr11:50730482-51456554	Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
23	nsv897573	chr11:50730482-51538376	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv897574	chr11:50730482-51559259	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
25	nsv897575	chr11:50730482-51579085	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
26	nsv897579	chr11:50766308-51365437	ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
27	nsv897580	chr11:50766308-51379204	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
28	nsv897581	chr11:51093950-51385894	ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
29	nsv1053373	chr11:51095992-51564415	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
30	nsv554427	chr11:51095992-51580203	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
31	nsv897582	chr11:51127089-51579085	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
32	nsv1050270	chr11:51176562-51377342	Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
33	nsv1046059	chr11:51176562-51564415	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
34	nsv1036886	chr11:51183682-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
35	esv1836283	chr11:51183814-51412453	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
36	esv1806314	chr11:51183814-51429291	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
37	esv1793228	chr11:51183814-51446535	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island	5 gene(s)	inside rSNPs	diseases
38	nsv554434	chr11:51183814-51593877	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
39	nsv554440	chr11:51187354-51578097	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
40	esv2751029	chr11:51192824-51563636	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
41	esv2755032	chr11:51192870-51429291	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
42	nsv1044063	chr11:51192870-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
43	esv1814281	chr11:51194488-51361832	ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
44	nsv1051064	chr11:51195051-51500015	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
45	nsv1036334	chr11:51195051-51551394	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
46	esv1811436	chr11:51196311-51362490	ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
47	nsv897585	chr11:51200820-51379204	ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
48	nsv1045774	chr11:51205141-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
49	nsv1048401	chr11:51215424-51564415	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
50	nsv1054282	chr11:51228076-51564415	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:51361600-51362400	ZNF genes & repeats	Liver	Liver

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