Variant report

Variant	rs12227457
Chromosome Location	chr12:120844620-120844621
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11065103	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11834189	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12302952	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1732847	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1794741	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2701634	0.84[ASN][1000 genomes]
rs2701635	0.84[ASN][1000 genomes]
rs2859282	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369096	chr12:120842869-120844817	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
2	chr12:120840600-120851000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:120840600-120851600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:120844400-120850200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:120844600-120850000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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