Variant report

Variant	rs12228165
Chromosome Location	chr12:119329815-119329816
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11069144	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11069149	1.00[CEU][hapmap]
rs11069150	1.00[CEU][hapmap]
rs11069192	1.00[EUR][1000 genomes]
rs11069193	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11069194	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11069199	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12230084	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12230120	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4288812	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4362197	0.87[ASN][1000 genomes]
rs4586236	1.00[CEU][hapmap]
rs7136869	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7295839	1.00[EUR][1000 genomes]
rs7967353	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv20139	chr12:119328798-119332851	Inactive region	lncRNA	n/a	inside rSNPs	diseases
3	nsv560393	chr12:119328906-119332931	Inactive region	lncRNA	n/a	inside rSNPs	diseases
4	nsv560394	chr12:119328906-119334779	Inactive region	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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