Variant report

Variant	rs1223049
Chromosome Location	chr6:102410732-102410733
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1223043	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1223045	0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1304634	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1312147	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1335035	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1335039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1417170	0.85[CEU][hapmap]
rs17062661	0.85[CEU][hapmap]
rs6924744	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7745267	0.85[CEU][hapmap]
rs7771009	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs9390795	0.82[CEU][hapmap]
rs9390797	0.82[CEU][hapmap]
rs9404166	0.82[CEU][hapmap]
rs987876	0.80[JPT][hapmap]
rs988376	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links