Variant report

Variant	rs1312147
Chromosome Location	chr6:102405010-102405011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1223043	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1223045	1.00[CEU][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap]
rs1223049	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1304634	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1335023	0.81[CEU][hapmap]
rs1335035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap]
rs1335037	0.85[CEU][hapmap]
rs1335039	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap]
rs1340270	0.87[CEU][hapmap]
rs1417170	0.92[CEU][hapmap]
rs17062661	0.92[CEU][hapmap]
rs6924744	0.93[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs7745267	0.92[CEU][hapmap];0.81[GIH][hapmap];0.86[TSI][hapmap]
rs7771009	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs9390795	0.88[CEU][hapmap]
rs9390797	0.89[CEU][hapmap];0.80[TSI][hapmap]
rs9404166	0.89[CEU][hapmap]
rs988376	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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