Variant report

Variant	rs1335037
Chromosome Location	chr6:102411015-102411016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1223045	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1304634	0.82[JPT][hapmap]
rs1312147	0.85[CEU][hapmap]
rs1335023	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1335035	0.82[CEU][hapmap]
rs1335039	0.82[CEU][hapmap]
rs1340270	0.91[CEU][hapmap]
rs1417170	0.92[CEU][hapmap]
rs17062661	0.88[CEU][hapmap]
rs6924744	0.85[CEU][hapmap]
rs7745267	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7771009	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9390795	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390797	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9404166	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs987876	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs988376	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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