Variant report

Variant	rs12231268
Chromosome Location	chr12:117528461-117528462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117522745..117531514-chr12:117533680..117541602,11	K562	blood:
2	chr12:117517303..117519421-chr12:117527171..117531025,3	K562	blood:
3	chr12:117521637..117523408-chr12:117528244..117530881,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258285	Chromatin interaction
ENSG00000088992	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11068325	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12301568	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12315321	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173650	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28384207	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58052341	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6490108	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134123	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305834	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405293	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73408527	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117515200-117535200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:117515400-117528600	Weak transcription	K562	blood
3	chr12:117521600-117530400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr12:117525200-117528600	Weak transcription	Right Ventricle	heart
5	chr12:117525400-117528800	Weak transcription	Fetal Heart	heart
6	chr12:117525400-117530800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:117526200-117528600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr12:117527200-117528600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:117527200-117528600	Weak transcription	Left Ventricle	heart
10	chr12:117527400-117529000	ZNF genes & repeats	Dnd41	blood
11	chr12:117527400-117533200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr12:117527600-117528600	ZNF genes & repeats	A549	lung
13	chr12:117527800-117529000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr12:117528000-117529200	Enhancers	Fetal Kidney	kidney
15	chr12:117528200-117534600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr12:117528400-117528800	Enhancers	Gastric	stomach
17	chr12:117528400-117528800	Flanking Active TSS	HepG2	liver
18	chr12:117528400-117529200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr12:117528400-117529600	Enhancers	Liver	Liver
20	chr12:117528400-117529800	Enhancers	Duodenum Mucosa	Duodenum
21	chr12:117528400-117531400	Enhancers	Stomach Mucosa	stomach
22	chr12:117528400-117534600	Enhancers	Pancreas	Pancrea

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