Variant report

Variant	rs12301568
Chromosome Location	chr12:117527177-117527178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11068325	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12231268	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299065	0.88[MEX][hapmap]
rs12315321	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173650	1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28384207	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4238051	1.00[MEX][hapmap]
rs58052341	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6490108	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134123	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305834	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405293	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73408527	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12301568	TESC	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117515200-117535200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:117515400-117528600	Weak transcription	K562	blood
3	chr12:117521600-117530400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr12:117523800-117527400	Weak transcription	Dnd41	blood
5	chr12:117524000-117528400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr12:117525000-117528400	Enhancers	HepG2	liver
7	chr12:117525200-117528600	Weak transcription	Right Ventricle	heart
8	chr12:117525400-117528800	Weak transcription	Fetal Heart	heart
9	chr12:117525400-117530800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:117526200-117528600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr12:117526600-117527200	Enhancers	Left Ventricle	heart
12	chr12:117526600-117527200	Enhancers	Stomach Mucosa	stomach
13	chr12:117526800-117527200	Bivalent Enhancer	Pancreas	Pancrea
14	chr12:117527000-117527800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr12:117527000-117528400	Weak transcription	Gastric	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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