Variant report

Variant	rs12234864
Chromosome Location	chr7:52809936-52809937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POM121L12-7	chr7:52809851-52810282	l_3414_chr7:52806589-52810282_testes

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs12171612	0.97[ASN][1000 genomes]
rs12234825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528990	0.91[ASN][1000 genomes]
rs2913019	0.97[ASN][1000 genomes]
rs2913021	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2913022	0.97[ASN][1000 genomes]
rs2913023	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2913024	0.94[ASN][1000 genomes]
rs2913025	0.94[ASN][1000 genomes]
rs2913026	0.94[ASN][1000 genomes]
rs2913028	0.94[ASN][1000 genomes]
rs2913029	0.94[ASN][1000 genomes]
rs2913031	0.94[ASN][1000 genomes]
rs2913033	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2913034	0.94[ASN][1000 genomes]
rs2913035	0.94[ASN][1000 genomes]
rs2913036	0.94[ASN][1000 genomes]
rs2913037	0.94[ASN][1000 genomes]
rs2913038	0.94[ASN][1000 genomes]
rs2913040	0.92[ASN][1000 genomes]
rs2913043	0.91[ASN][1000 genomes]
rs2913044	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2913045	0.91[ASN][1000 genomes]
rs2913046	0.91[ASN][1000 genomes]
rs2913048	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2913050	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2965497	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2965498	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2965499	0.97[ASN][1000 genomes]
rs2965500	0.97[ASN][1000 genomes]
rs2965501	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2965502	0.94[ASN][1000 genomes]
rs2965503	0.94[ASN][1000 genomes]
rs2965504	0.94[ASN][1000 genomes]
rs2965507	0.94[ASN][1000 genomes]
rs2965509	0.94[ASN][1000 genomes]
rs2965510	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2965511	0.92[ASN][1000 genomes]
rs2965513	0.94[ASN][1000 genomes]
rs2965514	0.94[ASN][1000 genomes]
rs2965515	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2965516	0.91[ASN][1000 genomes]
rs2965517	0.91[ASN][1000 genomes]
rs2965518	0.91[ASN][1000 genomes]
rs2965519	0.91[ASN][1000 genomes]
rs2965520	0.91[ASN][1000 genomes]
rs2965521	0.91[ASN][1000 genomes]
rs2965528	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2965636	0.81[EUR][1000 genomes]
rs55640209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55920878	1.00[ASN][1000 genomes]
rs55932596	0.97[ASN][1000 genomes]
rs56030615	0.95[ASN][1000 genomes]
rs56345548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67813524	1.00[ASN][1000 genomes]
rs6951848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73106245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73106249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73699162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888029	chr7:52797324-52881559	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv888030	chr7:52797324-52894247	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv888031	chr7:52797324-52944424	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52809600-52810200	Enhancers	Ovary	ovary

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