Variant report

Variant	rs2965515
Chromosome Location	chr7:52855738-52855739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs12171612	0.91[ASN][1000 genomes]
rs12234825	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12234864	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1528990	0.97[ASN][1000 genomes]
rs2195134	0.81[EUR][1000 genomes]
rs2912986	0.81[EUR][1000 genomes]
rs2912987	0.81[EUR][1000 genomes]
rs2913009	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2913019	0.97[ASN][1000 genomes]
rs2913021	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2913022	0.97[ASN][1000 genomes]
rs2913023	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913024	1.00[ASN][1000 genomes]
rs2913025	1.00[ASN][1000 genomes]
rs2913026	1.00[ASN][1000 genomes]
rs2913028	1.00[ASN][1000 genomes]
rs2913029	1.00[ASN][1000 genomes]
rs2913031	1.00[ASN][1000 genomes]
rs2913033	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913034	1.00[ASN][1000 genomes]
rs2913035	1.00[ASN][1000 genomes]
rs2913036	1.00[ASN][1000 genomes]
rs2913037	1.00[ASN][1000 genomes]
rs2913038	1.00[ASN][1000 genomes]
rs2913040	0.98[ASN][1000 genomes]
rs2913043	0.97[ASN][1000 genomes]
rs2913044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2913045	0.97[ASN][1000 genomes]
rs2913046	0.97[ASN][1000 genomes]
rs2913048	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2913050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2965497	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2965498	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2965499	0.97[ASN][1000 genomes]
rs2965500	0.97[ASN][1000 genomes]
rs2965501	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2965502	1.00[ASN][1000 genomes]
rs2965503	1.00[ASN][1000 genomes]
rs2965504	1.00[ASN][1000 genomes]
rs2965507	1.00[ASN][1000 genomes]
rs2965509	1.00[ASN][1000 genomes]
rs2965510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2965511	0.98[ASN][1000 genomes]
rs2965513	1.00[ASN][1000 genomes]
rs2965514	1.00[ASN][1000 genomes]
rs2965516	0.97[ASN][1000 genomes]
rs2965517	0.97[ASN][1000 genomes]
rs2965518	0.97[ASN][1000 genomes]
rs2965519	0.97[ASN][1000 genomes]
rs2965520	0.97[ASN][1000 genomes]
rs2965521	0.97[ASN][1000 genomes]
rs2965528	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2965628	0.81[AMR][1000 genomes]
rs2965636	0.83[EUR][1000 genomes]
rs2965640	0.81[EUR][1000 genomes]
rs2965644	0.81[EUR][1000 genomes]
rs2965662	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55640209	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55920878	0.94[ASN][1000 genomes]
rs55932596	0.91[ASN][1000 genomes]
rs56030615	0.89[ASN][1000 genomes]
rs56345548	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67813524	0.94[ASN][1000 genomes]
rs6951848	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73106245	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73106249	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73699162	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs990236	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888029	chr7:52797324-52881559	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv888030	chr7:52797324-52894247	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv888031	chr7:52797324-52944424	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv888032	chr7:52826003-52905932	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv538843	chr7:52843839-52861332	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52849800-52857200	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:52851600-52856400	Weak transcription	Rectal Smooth Muscle	rectum

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