Variant report

Variant	rs1223536
Chromosome Location	chr6:13155115-13155116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1223509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1223514	0.97[ASN][1000 genomes]
rs1223515	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223516	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223517	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223518	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223522	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223523	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223525	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223526	1.00[YRI][hapmap]
rs1223528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1223530	1.00[ASN][1000 genomes]
rs1223533	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1223537	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1753554	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1753555	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1753562	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1937769	0.85[CHB][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13142400-13159400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:13146000-13158400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:13146000-13159200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:13150000-13175600	Weak transcription	Lung	lung
5	chr6:13153400-13156800	Weak transcription	Left Ventricle	heart
6	chr6:13153400-13178000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:13153600-13159200	Weak transcription	Right Ventricle	heart
8	chr6:13153600-13164400	Weak transcription	Brain Germinal Matrix	brain
9	chr6:13153600-13167200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:13153600-13178200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:13153600-13178200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:13153800-13156400	Weak transcription	Brain Anterior Caudate	brain
13	chr6:13153800-13160800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:13153800-13168000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:13153800-13184200	Weak transcription	Aorta	Aorta
16	chr6:13154000-13156800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:13154000-13175600	Weak transcription	Fetal Heart	heart
18	chr6:13155000-13155200	Flanking Active TSS	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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