Variant report

Variant	rs1937769
Chromosome Location	chr6:13120366-13120367
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13116335..13118765-chr6:13119336..13122276,2	K562	blood:
2	chr6:13119238..13122024-chr6:13125784..13127890,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1223509	0.85[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs1223514	0.93[ASN][1000 genomes]
rs1223515	0.84[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223516	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223517	0.84[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223518	0.84[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223522	0.84[CHB][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223523	0.91[CHB][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223524	0.84[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223525	0.85[CHB][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223528	0.85[CHB][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223530	0.90[ASN][1000 genomes]
rs1223533	0.84[CHB][hapmap];0.90[ASN][1000 genomes]
rs1223536	0.85[CHB][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1223537	0.85[CHB][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1753554	0.84[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1753555	0.84[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1753562	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13114400-13123400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:13114600-13120400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:13115000-13120600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:13115000-13120600	Weak transcription	Right Atrium	heart
5	chr6:13115000-13135400	Weak transcription	Lung	lung
6	chr6:13116000-13120800	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:13116200-13121000	Weak transcription	Aorta	Aorta
8	chr6:13116400-13120600	Weak transcription	Fetal Stomach	stomach
9	chr6:13116600-13120600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:13116600-13123400	Weak transcription	Right Ventricle	heart
11	chr6:13118200-13120400	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:13118400-13122000	Enhancers	Pancreas	Pancrea
13	chr6:13119000-13121600	Enhancers	Fetal Heart	heart
14	chr6:13119400-13120800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:13119400-13121200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:13119400-13121600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:13119600-13121400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:13119600-13121600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:13119600-13121600	Enhancers	Fetal Muscle Trunk	muscle
20	chr6:13119600-13121600	Enhancers	Fetal Muscle Leg	muscle
21	chr6:13119600-13122200	Enhancers	Brain Anterior Caudate	brain
22	chr6:13119800-13120400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr6:13119800-13120400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr6:13119800-13120800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:13119800-13121000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:13119800-13121200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:13119800-13121200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:13119800-13121600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:13119800-13121600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:13120000-13121200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:13120200-13121200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:13120200-13122200	Enhancers	Left Ventricle	heart

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