Variant report

Variant	rs12236648
Chromosome Location	chr9:9602426-9602427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10977862	0.96[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap]
rs10977863	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10977865	0.92[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap]
rs10977869	0.91[YRI][hapmap]
rs1326772	0.81[JPT][hapmap];0.91[YRI][hapmap]
rs1326774	0.86[YRI][hapmap]
rs1412398	0.83[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap]
rs16929902	0.81[YRI][hapmap]
rs17785914	0.83[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs583921	0.87[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap]
rs585212	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs588996	0.84[MEX][hapmap]
rs598356	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap]
rs598768	0.83[CEU][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap]
rs602962	0.89[MEX][hapmap]
rs610789	0.87[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap]
rs615224	0.83[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap]
rs617286	0.84[MEX][hapmap]
rs651116	0.86[JPT][hapmap]
rs655125	0.83[CEU][hapmap]
rs656074	0.94[CHD][hapmap];0.86[JPT][hapmap]
rs657849	0.83[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap]
rs664869	0.83[CHB][hapmap];0.94[CHD][hapmap]
rs664921	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs676450	0.83[CEU][hapmap]
rs676855	0.83[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap]
rs677243	0.95[ASN][1000 genomes]
rs677302	0.95[ASN][1000 genomes]
rs677723	0.94[ASN][1000 genomes]
rs680102	0.91[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap]
rs7046780	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs9407436	0.85[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1023524	chr9:9496356-9666553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892266	chr9:9506817-9704501	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv466132	chr9:9516348-9605832	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv613314	chr9:9516348-9605832	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv466133	chr9:9516348-9609283	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv613315	chr9:9516348-9609283	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv466134	chr9:9526138-9605832	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv613316	chr9:9526138-9605832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv466135	chr9:9526811-9605832	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv613317	chr9:9526811-9605832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv466136	chr9:9538589-9605832	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv613318	chr9:9538589-9605832	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv892269	chr9:9562067-9605832	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12236648	PARP1	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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