Variant report

Variant	rs588996
Chromosome Location	chr9:9579884-9579885
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10977863	0.84[CEU][hapmap]
rs12236648	0.84[MEX][hapmap]
rs2821478	0.82[CEU][hapmap]
rs581604	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs582218	0.82[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs583921	0.91[CEU][hapmap]
rs585212	0.90[CEU][hapmap]
rs591074	0.87[JPT][hapmap]
rs598356	0.95[CEU][hapmap]
rs598768	0.86[CEU][hapmap]
rs602962	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs603229	0.82[CEU][hapmap];0.82[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap]
rs609641	0.82[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs610789	0.91[CEU][hapmap];0.87[JPT][hapmap]
rs615224	0.86[CEU][hapmap];0.87[JPT][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap]
rs617286	0.89[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap]
rs638230	0.83[CHD][hapmap];0.88[JPT][hapmap];0.81[TSI][hapmap]
rs647038	0.81[JPT][hapmap]
rs647190	0.81[JPT][hapmap]
rs649649	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap]
rs652565	0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap]
rs652649	0.83[CHD][hapmap];0.87[JPT][hapmap];0.87[TSI][hapmap]
rs653896	0.81[JPT][hapmap]
rs655125	0.86[CEU][hapmap]
rs657849	0.86[CEU][hapmap];0.87[JPT][hapmap]
rs660717	0.81[JPT][hapmap]
rs664921	0.86[CEU][hapmap]
rs668026	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap]
rs676450	0.86[CEU][hapmap]
rs676855	0.86[CEU][hapmap];0.87[JPT][hapmap]
rs679640	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.87[TSI][hapmap]
rs680102	0.87[CEU][hapmap]
rs681437	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap]
rs684508	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs69781	0.81[JPT][hapmap]
rs7850579	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs828837	0.81[JPT][hapmap]
rs828840	0.90[CHB][hapmap];0.87[CHD][hapmap]
rs864352	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs9408769	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9408770	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9408772	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1016118	chr9:9444744-9582169	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1023524	chr9:9496356-9666553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv892266	chr9:9506817-9704501	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv892267	chr9:9516348-9588336	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv613313	chr9:9516348-9591059	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv466132	chr9:9516348-9605832	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv613314	chr9:9516348-9605832	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv466133	chr9:9516348-9609283	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv613315	chr9:9516348-9609283	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv466134	chr9:9526138-9605832	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv613316	chr9:9526138-9605832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv466135	chr9:9526811-9605832	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv613317	chr9:9526811-9605832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv892268	chr9:9533788-9599213	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv466136	chr9:9538589-9605832	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv613318	chr9:9538589-9605832	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv892269	chr9:9562067-9605832	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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