The 2.0 version of rSNPBase

Variant report

Variant rs12236909
Chromosome Location chr9:84439405-84439406
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:84429200-84440600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr9:84430400-84440000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr9:84431000-84442400 Weak transcription Fetal Thymus thymus
4 chr9:84433800-84440800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr9:84435000-84440200 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr9:84435200-84440400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr9:84435200-84440400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr9:84435400-84440400 Weak transcription Fetal Brain Female brain
9 chr9:84435600-84440000 Enhancers NHEK skin
10 chr9:84435800-84440000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr9:84435800-84440000 Weak transcription NHDF-Ad bronchial
12 chr9:84435800-84440400 Weak transcription Fetal Kidney kidney
13 chr9:84435800-84440400 Weak transcription Placenta Placenta
14 chr9:84435800-84440600 Weak transcription Muscle Satellite Cultured Cells --
15 chr9:84435800-84440800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr9:84435800-84440800 Weak transcription Stomach Smooth Muscle stomach
17 chr9:84435800-84440800 Weak transcription NHLF lung
18 chr9:84435800-84441000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr9:84435800-84441400 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr9:84435800-84443000 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr9:84435800-84443600 Weak transcription H9 Cell Line embryonic stem cell
22 chr9:84435800-84444200 Weak transcription HSMMtube muscle
23 chr9:84436000-84443600 Weak transcription Colon Smooth Muscle Colon
24 chr9:84436000-84443800 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr9:84436000-84444200 Weak transcription Rectal Smooth Muscle rectum
26 chr9:84437200-84441800 Enhancers NH-A brain
27 chr9:84437400-84441400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr9:84437400-84441400 Enhancers HMEC breast
29 chr9:84437600-84441600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr9:84437600-84442800 Weak transcription Small Intestine intestine
31 chr9:84437800-84440000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr9:84438000-84440000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr9:84438000-84440400 Weak transcription HUES48 Cell Line embryonic stem cell
34 chr9:84438000-84440800 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr9:84438000-84441400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr9:84438200-84440000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr9:84438200-84440800 Weak transcription HUES6 Cell Line embryonic stem cell
38 chr9:84438200-84442400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr9:84438200-84444000 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr9:84438400-84440000 Weak transcription A549 lung
41 chr9:84438600-84447000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
42 chr9:84438800-84440800 Weak transcription HUES64 Cell Line embryonic stem cell
43 chr9:84439000-84439800 Weak transcription HUVEC blood vessel
44 chr9:84439000-84440000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr9:84439000-84440200 Weak transcription ES-I3 Cell Line embryonic stem cell
46 chr9:84439000-84440200 Weak transcription HSMM muscle
47 chr9:84439000-84444200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr9:84439200-84439600 Enhancers Liver Liver
49 chr9:84439200-84440200 Weak transcription Fetal Stomach stomach
50 chr9:84439200-84440400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015