Variant report

Variant	rs7025552
Chromosome Location	chr9:84436813-84436814
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12236909	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2281936	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3482406	chr9:84436660-84437232	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
2	esv3482407	chr9:84436726-84437177	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
3	esv3482409	chr9:84436785-84437137	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84429200-84440600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:84429800-84437200	Weak transcription	Small Intestine	intestine
3	chr9:84430000-84437400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:84430400-84438800	Weak transcription	Brain Substantia Nigra	brain
5	chr9:84430400-84440000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:84430600-84437400	Weak transcription	Psoas Muscle	Psoas
7	chr9:84430600-84438000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:84431000-84442400	Weak transcription	Fetal Thymus	thymus
9	chr9:84433800-84440800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:84434600-84437800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:84435000-84440200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr9:84435200-84437400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:84435200-84437400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:84435200-84438600	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:84435200-84440400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:84435200-84440400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:84435400-84437400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:84435400-84440400	Weak transcription	Fetal Brain Female	brain
19	chr9:84435600-84437200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:84435600-84438600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:84435600-84439000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:84435600-84440000	Enhancers	NHEK	skin
23	chr9:84435800-84437200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:84435800-84437200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:84435800-84437200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:84435800-84437200	Weak transcription	Fetal Stomach	stomach
27	chr9:84435800-84437400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:84435800-84437400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:84435800-84437400	Weak transcription	HMEC	breast
30	chr9:84435800-84437600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr9:84435800-84437800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr9:84435800-84440000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:84435800-84440000	Weak transcription	NHDF-Ad	bronchial
34	chr9:84435800-84440400	Weak transcription	Fetal Kidney	kidney
35	chr9:84435800-84440400	Weak transcription	Placenta	Placenta
36	chr9:84435800-84440600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr9:84435800-84440800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:84435800-84440800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr9:84435800-84440800	Weak transcription	NHLF	lung
40	chr9:84435800-84441000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:84435800-84441400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr9:84435800-84443000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr9:84435800-84443600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr9:84435800-84444200	Weak transcription	HSMMtube	muscle
45	chr9:84436000-84437200	Weak transcription	Brain Germinal Matrix	brain
46	chr9:84436000-84437200	Weak transcription	Fetal Lung	lung
47	chr9:84436000-84437200	Weak transcription	NH-A	brain
48	chr9:84436000-84437400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr9:84436000-84438600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr9:84436000-84438600	Weak transcription	Adipose Nuclei	Adipose

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