Variant report

Variant	rs12236961
Chromosome Location	chr9:33483230-33483231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10465024	0.82[ASN][1000 genomes]
rs10465079	1.00[AMR][1000 genomes]
rs10813986	0.83[AFR][1000 genomes]
rs10971527	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10971528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10971529	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10971531	0.82[AFR][1000 genomes]
rs10971532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10971533	1.00[AMR][1000 genomes]
rs10971536	0.82[ASN][1000 genomes]
rs10971537	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10971539	1.00[AMR][1000 genomes]
rs10971542	1.00[AMR][1000 genomes]
rs11789757	0.84[ASN][1000 genomes]
rs11790376	1.00[ASN][1000 genomes]
rs11795028	0.80[AFR][1000 genomes]
rs35214890	0.95[ASN][1000 genomes]
rs59058713	0.87[AFR][1000 genomes]
rs7031985	1.00[AMR][1000 genomes]
rs7033723	1.00[AMR][1000 genomes]
rs7038544	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043800	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482852	0.87[AFR][1000 genomes]
rs73482880	1.00[AMR][1000 genomes]
rs7869361	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024207	chr9:33296368-33574892	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:33474800-33485600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:33474800-33496000	Weak transcription	HUVEC	blood vessel
3	chr9:33474800-33498200	Weak transcription	HSMMtube	muscle
4	chr9:33475000-33488800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:33475000-33488800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:33475000-33492400	Weak transcription	Adipose Nuclei	Adipose
7	chr9:33475000-33494400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:33475000-33510400	Weak transcription	Fetal Lung	lung
9	chr9:33475000-33510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:33475200-33488800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:33477000-33496000	Weak transcription	Brain Angular Gyrus	brain
12	chr9:33477200-33485000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:33477200-33486000	Weak transcription	Thymus	Thymus
14	chr9:33478600-33485200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:33478800-33510600	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:33479400-33486200	Weak transcription	Fetal Stomach	stomach
17	chr9:33480400-33485000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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