Variant report

Variant	rs10971531
Chromosome Location	chr9:33485953-33485954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10465079	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10813986	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10971527	0.82[AFR][1000 genomes]
rs10971529	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10971532	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10971533	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10971537	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10971539	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10971542	0.88[ASN][1000 genomes]
rs12236961	0.82[AFR][1000 genomes]
rs7022355	0.93[ASN][1000 genomes]
rs7027139	0.84[ASN][1000 genomes]
rs7031985	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7033723	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7038544	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7043800	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73482880	0.88[ASN][1000 genomes]
rs7861182	0.88[ASN][1000 genomes]
rs7864131	0.86[ASN][1000 genomes]
rs7869361	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024207	chr9:33296368-33574892	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:33474800-33496000	Weak transcription	HUVEC	blood vessel
2	chr9:33474800-33498200	Weak transcription	HSMMtube	muscle
3	chr9:33475000-33488800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:33475000-33488800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:33475000-33492400	Weak transcription	Adipose Nuclei	Adipose
6	chr9:33475000-33494400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:33475000-33510400	Weak transcription	Fetal Lung	lung
8	chr9:33475000-33510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:33475200-33488800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:33477000-33496000	Weak transcription	Brain Angular Gyrus	brain
11	chr9:33477200-33486000	Weak transcription	Thymus	Thymus
12	chr9:33478800-33510600	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:33479400-33486200	Weak transcription	Fetal Stomach	stomach
14	chr9:33485600-33486400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links