Variant report

Variant	rs7864131
Chromosome Location	chr9:33508134-33508135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:33167075..33168598-chr9:33506552..33508711,2	MCF-7	breast:
2	chr9:33506278..33509110-chr9:33511393..33513037,2	MCF-7	breast:
3	chr9:33506883..33509573-chr9:33522858..33524863,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230453	Chromatin interaction
ENSG00000086062	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10465079	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10813986	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10971528	1.00[EUR][1000 genomes]
rs10971529	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10971531	0.86[ASN][1000 genomes]
rs10971532	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10971533	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10971537	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10971539	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10971542	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3739682	1.00[EUR][1000 genomes]
rs3814514	1.00[EUR][1000 genomes]
rs7022355	0.93[ASN][1000 genomes]
rs7027139	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7031985	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7033723	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7038544	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7043800	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73482880	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7847340	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7861182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024207	chr9:33296368-33574892	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv972306	chr9:33486353-33510883	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv427840	chr9:33495185-33989975	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:33475000-33510400	Weak transcription	Fetal Lung	lung
2	chr9:33475000-33510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:33478800-33510600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:33495600-33510200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:33498200-33510400	Weak transcription	Fetal Stomach	stomach
6	chr9:33500000-33510600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:33500800-33510800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:33502800-33510600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:33502800-33510800	Weak transcription	Left Ventricle	heart
10	chr9:33504800-33510600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:33504800-33510600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:33505000-33508800	Weak transcription	Dnd41	blood
13	chr9:33505400-33510600	Weak transcription	Right Ventricle	heart
14	chr9:33506400-33510600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:33506800-33510800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:33506800-33510800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:33506800-33510800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:33506800-33510800	Weak transcription	Esophagus	oesophagus
19	chr9:33507200-33510400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:33507200-33510400	Weak transcription	HepG2	liver
21	chr9:33507200-33510800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:33507400-33508200	Enhancers	Osteobl	bone
23	chr9:33507400-33510200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:33507400-33510200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:33507400-33510200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:33507400-33510200	Weak transcription	HMEC	breast
27	chr9:33507400-33510200	Weak transcription	K562	blood
28	chr9:33507400-33510400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:33507400-33510400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:33507400-33510400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr9:33507400-33510400	Weak transcription	A549	lung
32	chr9:33507400-33510400	Weak transcription	NH-A	brain
33	chr9:33507400-33510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:33507400-33510600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:33507400-33510600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr9:33507400-33510600	Weak transcription	HSMMtube	muscle
37	chr9:33507400-33510600	Weak transcription	NHDF-Ad	bronchial
38	chr9:33507400-33510600	Weak transcription	NHLF	lung
39	chr9:33507400-33510800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr9:33507400-33510800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr9:33507400-33510800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr9:33507400-33510800	Weak transcription	HSMM	muscle
43	chr9:33507600-33508800	Enhancers	HUVEC	blood vessel
44	chr9:33507600-33510400	Weak transcription	NHEK	skin
45	chr9:33508000-33508800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr9:33508000-33509200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr9:33508000-33509200	Enhancers	Hela-S3	cervix
48	chr9:33508000-33510200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links