Variant report

Variant	rs12240533
Chromosome Location	chr10:26576782-26576783
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12242971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7068510	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7905275	0.94[AMR][1000 genomes]
rs870341	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs870342	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26564000-26581800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26566400-26579600	Weak transcription	Brain Germinal Matrix	brain
3	chr10:26576600-26578000	Strong transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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