Variant report

Variant	rs7068510
Chromosome Location	chr10:26580926-26580927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12240533	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12242971	0.83[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7078680	0.93[YRI][hapmap];0.82[AMR][1000 genomes]
rs7905275	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190798	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs870341	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs870342	0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7068510	EIF3CL	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26564000-26581800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26578000-26581600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26580000-26581000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:26580000-26582000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:26580400-26582000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:26580600-26581600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:26580600-26582600	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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