Variant report

Variant	rs12240889
Chromosome Location	chr10:61856761-61856762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61855989..61858224-chr10:62146602..62149493,2	K562	blood:

Variant related genes	Relation type
ENSG00000151150	Chromatin interaction

rs_ID	r²[population]
rs10994184	0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10994186	0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10994202	1.00[MEX][hapmap]
rs12268832	1.00[MEX][hapmap]
rs7917162	1.00[MEX][hapmap]

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
2	chr10:61805600-61859800	Weak transcription	Brain Substantia Nigra	brain
3	chr10:61817400-61857000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:61819600-61860200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:61824200-61856800	Weak transcription	NH-A	brain
6	chr10:61828400-61859800	Weak transcription	Fetal Brain Male	brain
7	chr10:61834000-61868000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:61835000-61859600	Weak transcription	Brain Angular Gyrus	brain
9	chr10:61835400-61870000	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:61835400-61883200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:61835600-61874600	Weak transcription	Brain Anterior Caudate	brain
12	chr10:61835600-61883000	Weak transcription	Fetal Heart	heart
13	chr10:61835800-61866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:61836000-61865200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:61836000-61874800	Weak transcription	HSMMtube	muscle
16	chr10:61836000-61881800	Weak transcription	Left Ventricle	heart
17	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:61836200-61864400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:61836200-61870000	Weak transcription	Fetal Brain Female	brain
20	chr10:61836200-61870200	Weak transcription	Fetal Stomach	stomach
21	chr10:61838800-61864000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:61839800-61859000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:61839800-61876400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:61840800-61858200	Weak transcription	Colonic Mucosa	Colon
25	chr10:61841200-61899400	Weak transcription	Right Ventricle	heart
26	chr10:61842800-61856800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:61843000-61856800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:61843000-61864800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:61843000-61868600	Weak transcription	Ovary	ovary
30	chr10:61846600-61856800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:61846600-61864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:61846600-61864600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:61846600-61888600	Weak transcription	Fetal Kidney	kidney
34	chr10:61846800-61856800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:61847000-61863000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr10:61847000-61868200	Weak transcription	Primary T cells from cord blood	blood
37	chr10:61847200-61861600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:61847200-61865600	Weak transcription	Aorta	Aorta
39	chr10:61848000-61856800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:61848000-61863200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:61848000-61874200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr10:61848000-61900400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:61848200-61857400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr10:61848200-61863200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:61848200-61868000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr10:61848200-61868200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:61848200-61874800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr10:61848400-61889800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:61848600-61857000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:61849200-61859000	Weak transcription	Rectal Mucosa Donor 31	rectum

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