Variant report

Variant	rs7917162
Chromosome Location	chr10:62035840-62035841
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62024453..62026761-chr10:62034369..62037044,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10821709	0.92[ASW][hapmap];0.83[YRI][hapmap]
rs10821710	0.83[YRI][hapmap]
rs10994202	1.00[MEX][hapmap]
rs1158452	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11592290	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11813578	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11815139	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11815504	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11816837	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs11818962	1.00[AMR][1000 genomes]
rs12240889	1.00[MEX][hapmap]
rs12769536	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12780261	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12780624	0.81[YRI][hapmap]
rs12781705	0.83[YRI][hapmap]
rs12782314	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12782806	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1459723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914693	0.81[YRI][hapmap]
rs35044728	0.89[ASN][1000 genomes]
rs4262679	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4638263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57082469	1.00[EUR][1000 genomes]
rs6479709	0.83[YRI][hapmap]
rs6479710	0.83[YRI][hapmap]
rs68143724	0.89[ASN][1000 genomes]
rs7068769	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069326	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095717	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7098008	0.85[ASW][hapmap]
rs7100195	1.00[EUR][1000 genomes]
rs71495634	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs71495635	0.89[ASN][1000 genomes]
rs72820502	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72822287	0.87[ASN][1000 genomes]
rs7910450	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920124	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898330	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs922116	0.92[ASW][hapmap];0.83[YRI][hapmap]
rs922117	0.83[YRI][hapmap]
rs922118	0.83[YRI][hapmap]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62007000-62040600	Weak transcription	HSMMtube	muscle
2	chr10:62014400-62037400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:62015000-62041800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:62018000-62038600	Weak transcription	Fetal Lung	lung
5	chr10:62018600-62038400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:62019200-62040800	Weak transcription	Fetal Brain Male	brain
7	chr10:62021000-62037400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr10:62021600-62038200	Weak transcription	Ovary	ovary
9	chr10:62022400-62040600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:62023200-62040400	Weak transcription	Brain Substantia Nigra	brain
11	chr10:62023200-62041200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:62023200-62043800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:62023200-62053400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:62023400-62036200	Weak transcription	Brain Anterior Caudate	brain
15	chr10:62023600-62037400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:62023600-62038400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:62023600-62040600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr10:62023600-62041000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:62023600-62041200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:62023800-62036200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:62023800-62036200	Weak transcription	Brain Angular Gyrus	brain
22	chr10:62023800-62036600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr10:62023800-62037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:62023800-62038400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr10:62023800-62038600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:62023800-62040000	Weak transcription	Fetal Intestine Small	intestine
27	chr10:62023800-62040200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:62023800-62040200	Weak transcription	Fetal Intestine Large	intestine
29	chr10:62023800-62040400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:62023800-62040400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:62023800-62040400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:62023800-62040800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:62023800-62040800	Weak transcription	Lung	lung
34	chr10:62023800-62041000	Weak transcription	Spleen	Spleen
35	chr10:62023800-62042000	Weak transcription	Esophagus	oesophagus
36	chr10:62023800-62043800	Weak transcription	Right Ventricle	heart
37	chr10:62023800-62048000	Weak transcription	Fetal Stomach	stomach
38	chr10:62023800-62051600	Weak transcription	Pancreas	Pancrea
39	chr10:62023800-62055800	Weak transcription	Gastric	stomach
40	chr10:62024000-62040200	Weak transcription	Primary T cells from cord blood	blood
41	chr10:62026600-62040600	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:62027400-62059800	Weak transcription	Psoas Muscle	Psoas
43	chr10:62028000-62040800	Weak transcription	Right Atrium	heart
44	chr10:62030800-62036200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr10:62031000-62040800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:62032000-62038200	Weak transcription	Fetal Heart	heart
47	chr10:62034200-62039000	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr10:62034400-62038200	Weak transcription	Left Ventricle	heart
49	chr10:62034400-62040800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:62034800-62038200	Weak transcription	Rectal Mucosa Donor 31	rectum

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