Variant report

Variant	rs12242884
Chromosome Location	chr10:94718137-94718138
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94717524..94719728-chr10:94723592..94725856,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11187218	1.00[AMR][1000 genomes]
rs11187241	1.00[AMR][1000 genomes]
rs11187248	1.00[AMR][1000 genomes]
rs11187249	1.00[AMR][1000 genomes]
rs12256443	1.00[AMR][1000 genomes]
rs12268331	1.00[AMR][1000 genomes]
rs13376857	1.00[AMR][1000 genomes]
rs28631480	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35647717	1.00[AMR][1000 genomes]
rs7069795	1.00[AMR][1000 genomes]
rs7078968	1.00[AMR][1000 genomes]
rs7916356	1.00[AMR][1000 genomes]
rs7916411	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
3	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
4	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
6	chr10:94658600-94725800	Weak transcription	Lung	lung
7	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
9	chr10:94674800-94724600	Weak transcription	HSMM	muscle
10	chr10:94683400-94724400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:94686600-94719600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:94687200-94718200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:94687400-94724200	Weak transcription	NHLF	lung
14	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
15	chr10:94689800-94724600	Weak transcription	A549	lung
16	chr10:94690000-94730000	Weak transcription	Placenta	Placenta
17	chr10:94692800-94721800	Strong transcription	HUVEC	blood vessel
18	chr10:94692800-94724400	Weak transcription	Small Intestine	intestine
19	chr10:94699200-94721600	Weak transcription	Fetal Intestine Large	intestine
20	chr10:94699400-94728600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:94699800-94722800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr10:94700000-94723000	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:94700400-94722800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr10:94701400-94720600	Weak transcription	Fetal Kidney	kidney
25	chr10:94703000-94731800	Weak transcription	Spleen	Spleen
26	chr10:94704000-94718400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:94704600-94731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr10:94706600-94731600	Weak transcription	Hela-S3	cervix
29	chr10:94707400-94735400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:94708200-94732400	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:94709000-94721800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:94709000-94731800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:94709000-94735400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr10:94709400-94720000	Weak transcription	Right Ventricle	heart
35	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr10:94711200-94730000	Weak transcription	K562	blood
37	chr10:94712200-94720600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
39	chr10:94713000-94728800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr10:94713200-94720600	Weak transcription	Fetal Stomach	stomach
41	chr10:94713200-94731600	Weak transcription	Fetal Intestine Small	intestine
42	chr10:94713200-94731800	Weak transcription	Psoas Muscle	Psoas
43	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr10:94713400-94719400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:94713400-94723800	Weak transcription	Brain Angular Gyrus	brain
46	chr10:94713400-94730800	Weak transcription	Adipose Nuclei	Adipose
47	chr10:94713400-94731000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr10:94713400-94732000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:94713400-94738600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:94713600-94718200	Weak transcription	Primary T cells from cord blood	blood

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