Variant report

Variant	rs35647717
Chromosome Location	chr10:94715431-94715432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94710458..94712008-chr10:94713813..94715571,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11187218	1.00[AMR][1000 genomes]
rs11187241	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11187248	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11187249	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242884	1.00[AMR][1000 genomes]
rs12244912	0.89[AFR][1000 genomes]
rs12250579	1.00[AFR][1000 genomes]
rs12256443	1.00[AMR][1000 genomes]
rs12258050	1.00[AFR][1000 genomes]
rs12268331	1.00[AMR][1000 genomes]
rs13376857	1.00[AMR][1000 genomes]
rs28631480	1.00[AMR][1000 genomes]
rs7069795	1.00[AMR][1000 genomes]
rs7078968	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7916356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7916411	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
2	chr10:94652600-94718000	Weak transcription	Ovary	ovary
3	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
4	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
5	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
6	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
8	chr10:94658600-94725800	Weak transcription	Lung	lung
9	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
11	chr10:94672000-94716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:94674800-94724600	Weak transcription	HSMM	muscle
13	chr10:94681000-94717000	Weak transcription	Brain Anterior Caudate	brain
14	chr10:94683400-94724400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:94686600-94719600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:94687200-94718200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:94687400-94724200	Weak transcription	NHLF	lung
18	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
19	chr10:94689800-94724600	Weak transcription	A549	lung
20	chr10:94690000-94717600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:94690000-94730000	Weak transcription	Placenta	Placenta
22	chr10:94692200-94717800	Weak transcription	Brain Germinal Matrix	brain
23	chr10:94692800-94721800	Strong transcription	HUVEC	blood vessel
24	chr10:94692800-94724400	Weak transcription	Small Intestine	intestine
25	chr10:94699000-94717400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:94699200-94721600	Weak transcription	Fetal Intestine Large	intestine
27	chr10:94699400-94728600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:94699800-94722800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:94700000-94723000	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr10:94700400-94722800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr10:94701200-94715800	Weak transcription	Brain Hippocampus Middle	brain
32	chr10:94701400-94720600	Weak transcription	Fetal Kidney	kidney
33	chr10:94703000-94731800	Weak transcription	Spleen	Spleen
34	chr10:94704000-94718400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:94704400-94717800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:94704600-94731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:94705600-94716400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:94706600-94731600	Weak transcription	Hela-S3	cervix
39	chr10:94706800-94717400	Strong transcription	Dnd41	blood
40	chr10:94707400-94735400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:94708200-94732400	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:94709000-94721800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:94709000-94731800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr10:94709000-94735400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:94709400-94720000	Weak transcription	Right Ventricle	heart
46	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr10:94711200-94730000	Weak transcription	K562	blood
48	chr10:94711600-94715600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:94712200-94720600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart

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