Variant report

Variant	rs12250579
Chromosome Location	chr10:94648446-94648447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94643437..94646429-chr10:94647651..94649627,2	K562	blood:
2	chr10:94646967..94649814-chr10:94651254..94653769,2	K562	blood:
3	chr10:94646967..94648497-chr10:94650916..94652754,2	K562	blood:
4	chr10:94637242..94640461-chr10:94646204..94649459,3	K562	blood:

Variant related genes	Relation type
ENSG00000225118	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11187241	0.95[AFR][1000 genomes]
rs11187248	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs11187249	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12242813	1.00[AMR][1000 genomes]
rs12244912	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250744	1.00[AMR][1000 genomes]
rs12252880	1.00[AMR][1000 genomes]
rs12258050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265732	1.00[AMR][1000 genomes]
rs12269076	1.00[AMR][1000 genomes]
rs35647717	1.00[AFR][1000 genomes]
rs7069481	1.00[AMR][1000 genomes]
rs7078968	0.86[AFR][1000 genomes]
rs7100065	1.00[AMR][1000 genomes]
rs7916356	0.95[AFR][1000 genomes]
rs7916411	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9325463	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94634800-94650400	Weak transcription	Psoas Muscle	Psoas
4	chr10:94637200-94651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:94638400-94652000	Weak transcription	Right Atrium	heart
6	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
7	chr10:94640800-94651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:94641200-94652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:94641400-94651800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:94641800-94651800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:94646000-94648600	Enhancers	HUVEC	blood vessel
14	chr10:94646200-94652000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:94646200-94652400	Weak transcription	Brain Anterior Caudate	brain
16	chr10:94646400-94652200	Weak transcription	Right Ventricle	heart
17	chr10:94646600-94648800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:94646600-94650200	Weak transcription	K562	blood
19	chr10:94646600-94651400	Weak transcription	HepG2	liver
20	chr10:94646600-94651600	Weak transcription	NH-A	brain
21	chr10:94646600-94651800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:94646600-94651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:94646600-94651800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:94646600-94651800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:94646600-94651800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:94646600-94651800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:94646600-94652000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr10:94646600-94652000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:94646600-94652000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:94646600-94652000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:94646600-94652000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr10:94647000-94648800	Weak transcription	A549	lung
33	chr10:94647800-94649400	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr10:94647800-94650400	Weak transcription	Fetal Intestine Large	intestine
35	chr10:94647800-94650800	Weak transcription	Fetal Intestine Small	intestine
36	chr10:94647800-94651800	Weak transcription	Fetal Heart	heart
37	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr10:94648200-94649200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:94648200-94650600	Weak transcription	Hela-S3	cervix
40	chr10:94648400-94652000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:94648400-94652000	Weak transcription	Brain Angular Gyrus	brain

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