Variant report

Variant	rs9325463
Chromosome Location	chr10:94531600-94531601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12242813	1.00[AMR][1000 genomes]
rs12244912	1.00[AMR][1000 genomes]
rs12250579	1.00[AMR][1000 genomes]
rs12250744	1.00[AMR][1000 genomes]
rs12252880	1.00[AMR][1000 genomes]
rs12258050	1.00[AMR][1000 genomes]
rs12265732	1.00[AMR][1000 genomes]
rs12269076	1.00[AMR][1000 genomes]
rs7069481	1.00[AMR][1000 genomes]
rs7100065	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9325463	HHLA3	trans	lymphoblastoid	seeQTL
rs9325463	OSBPL10	trans	lymphoblastoid	seeQTL
rs9325463	C21orf56	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94531400-94531600	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr10:94531400-94531800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:94531600-94532600	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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