Variant report

Variant	rs12258050
Chromosome Location	chr10:94654496-94654497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94652774..94654911-chr10:94796709..94799688,2	MCF-7	breast:
2	chr10:94653732..94656423-chr10:94657725..94660166,2	K562	blood:
3	chr10:94653707..94655226-chr10:94655974..94658255,2	MCF-7	breast:
4	chr10:94652243..94655059-chr10:94655281..94657165,2	K562	blood:
5	chr10:94654369..94656417-chr10:94660704..94662374,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11187241	0.95[AFR][1000 genomes]
rs11187248	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs11187249	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12242813	1.00[AMR][1000 genomes]
rs12244912	1.00[ASW][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250579	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250744	1.00[AMR][1000 genomes]
rs12252880	1.00[AMR][1000 genomes]
rs12265732	1.00[AMR][1000 genomes]
rs12269076	1.00[AMR][1000 genomes]
rs35647717	1.00[AFR][1000 genomes]
rs7069481	1.00[AMR][1000 genomes]
rs7078968	0.86[AFR][1000 genomes]
rs7100065	1.00[AMR][1000 genomes]
rs7916356	0.95[AFR][1000 genomes]
rs7916411	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9325463	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
4	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:94650200-94656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:94650400-94655200	Enhancers	Fetal Intestine Large	intestine
9	chr10:94650600-94654800	Enhancers	HMEC	breast
10	chr10:94650600-94656200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:94650800-94654600	Enhancers	NHEK	skin
12	chr10:94650800-94655600	Enhancers	Fetal Intestine Small	intestine
13	chr10:94650800-94656600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:94650800-94661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:94651400-94655000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:94651800-94655200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:94651800-94655400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:94651800-94655400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:94652000-94655000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:94652000-94655400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:94652000-94655400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr10:94652000-94655400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:94652400-94654800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:94652400-94656400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:94652400-94656800	Weak transcription	Adipose Nuclei	Adipose
26	chr10:94652400-94657000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:94652400-94657200	Weak transcription	Aorta	Aorta
28	chr10:94652400-94660200	Weak transcription	Spleen	Spleen
29	chr10:94652400-94661200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
32	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
33	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
34	chr10:94652600-94656200	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:94652600-94656400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr10:94652600-94656400	Weak transcription	K562	blood
37	chr10:94652600-94656800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:94652600-94656800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:94652600-94657000	Weak transcription	Lung	lung
40	chr10:94652600-94657200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:94652600-94657600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:94652600-94663800	Weak transcription	Liver	Liver
43	chr10:94652600-94664000	Weak transcription	Small Intestine	intestine
44	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
45	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
46	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
49	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
50	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links