Variant report

Variant	rs12244912
Chromosome Location	chr10:94602854-94602855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94439735..94442066-chr10:94601811..94604673,2	K562	blood:
2	chr10:94602547..94603439-chr10:94639714..94640841,5	MCF-7	breast:
3	chr10:94602842..94604573-chr10:94619826..94622814,3	K562	blood:
4	chr10:94602572..94603473-chr10:95116955..95117673,2	K562	blood:
5	chr10:94601204..94605771-chr10:94608144..94610303,4	MCF-7	breast:
6	chr10:94602628..94603467-chr10:94639636..94640258,2	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11187241	0.85[AFR][1000 genomes]
rs11187248	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11187249	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12242813	1.00[AMR][1000 genomes]
rs12250579	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250744	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252880	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258050	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265732	1.00[AMR][1000 genomes]
rs12269076	1.00[AMR][1000 genomes]
rs35647717	0.89[AFR][1000 genomes]
rs7069481	1.00[AMR][1000 genomes]
rs7100065	1.00[AMR][1000 genomes]
rs7916356	0.85[AFR][1000 genomes]
rs7916411	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9325463	1.00[AMR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94592200-94605600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr10:94596800-94604400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
4	chr10:94598600-94607200	Weak transcription	Primary T cells from cord blood	blood
5	chr10:94599200-94603000	Weak transcription	Placenta	Placenta
6	chr10:94599400-94607200	Weak transcription	Osteobl	bone
7	chr10:94599400-94607400	Weak transcription	Spleen	Spleen
8	chr10:94599600-94603000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:94599600-94604200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:94599600-94606600	Weak transcription	Lung	lung
11	chr10:94599600-94607600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:94600600-94607800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:94602200-94603200	Enhancers	HepG2	liver
14	chr10:94602200-94603400	Enhancers	Adipose Nuclei	Adipose
15	chr10:94602400-94603000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:94602400-94603000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:94602400-94603400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:94602600-94603000	Enhancers	Hela-S3	cervix
19	chr10:94602600-94603200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:94602600-94603400	Enhancers	A549	lung
21	chr10:94602600-94603400	Enhancers	HUVEC	blood vessel
22	chr10:94602600-94603600	Enhancers	Fetal Muscle Leg	muscle
23	chr10:94602600-94605600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:94602600-94607600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:94602800-94603000	Enhancers	Fetal Intestine Large	intestine
26	chr10:94602800-94603000	Enhancers	Fetal Lung	lung
27	chr10:94602800-94603000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr10:94602800-94603200	Enhancers	Liver	Liver
29	chr10:94602800-94603200	Enhancers	Dnd41	blood
30	chr10:94602800-94603200	Enhancers	K562	blood
31	chr10:94602800-94604000	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr10:94602800-94605600	Enhancers	Primary hematopoietic stem cells	blood
33	chr10:94602800-94605600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:94602800-94607400	Enhancers	Primary monocytes fromperipheralblood	blood

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