Variant report
| Variant | rs7100065 |
|---|---|
| Chromosome Location | chr10:94539828-94539829 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:94449785..94452666-chr10:94539359..94541248,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000152804 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs12242813 | 1.00[AMR][1000 genomes] |
| rs12244912 | 1.00[AMR][1000 genomes] |
| rs12250579 | 1.00[AMR][1000 genomes] |
| rs12250744 | 1.00[AMR][1000 genomes] |
| rs12252880 | 1.00[AMR][1000 genomes] |
| rs12258050 | 1.00[AMR][1000 genomes] |
| rs12265732 | 1.00[AMR][1000 genomes] |
| rs12269076 | 1.00[AMR][1000 genomes] |
| rs7069481 | 1.00[AMR][1000 genomes] |
| rs9325463 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446249 | chr10:94374508-94549394 | Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | esv2761615 | chr10:94538960-94545531 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
