Variant report

Variant	rs12244068
Chromosome Location	chr10:92680457-92680458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92670581..92673630-chr10:92677940..92680636,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10881829	0.87[YRI][hapmap]
rs10881833	0.82[YRI][hapmap]
rs10881835	1.00[YRI][hapmap]
rs11186298	0.87[YRI][hapmap]
rs11186333	1.00[YRI][hapmap]
rs11186346	1.00[YRI][hapmap]
rs12241669	1.00[YRI][hapmap]
rs12261388	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
2	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea
3	chr10:92672800-92689000	Weak transcription	Fetal Thymus	thymus
4	chr10:92676800-92680800	Active TSS	Right Ventricle	heart
5	chr10:92677200-92681000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:92677400-92680800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:92677400-92680800	Active TSS	Right Atrium	heart
8	chr10:92678400-92682200	Enhancers	NHDF-Ad	bronchial
9	chr10:92678600-92681000	Active TSS	Left Ventricle	heart
10	chr10:92678600-92682800	Weak transcription	Dnd41	blood
11	chr10:92678600-92689400	Weak transcription	Fetal Lung	lung
12	chr10:92678800-92680800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr10:92679000-92681200	Active TSS	HSMMtube	muscle
14	chr10:92679200-92681000	Flanking Active TSS	HepG2	liver
15	chr10:92679200-92681400	Flanking Active TSS	Osteobl	bone
16	chr10:92679600-92680800	Enhancers	Hela-S3	cervix
17	chr10:92679600-92681600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:92679800-92680800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:92679800-92681000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:92679800-92681000	Flanking Active TSS	NH-A	brain
21	chr10:92679800-92681600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:92680000-92680800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:92680000-92681000	Active TSS	Fetal Heart	heart
24	chr10:92680000-92681200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
25	chr10:92680000-92681400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:92680200-92680600	Active TSS	Fetal Muscle Leg	muscle
27	chr10:92680200-92680800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:92680200-92680800	Weak transcription	Placenta	Placenta
29	chr10:92680200-92681000	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr10:92680200-92681000	Active TSS	Psoas Muscle	Psoas
31	chr10:92680200-92681200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
32	chr10:92680200-92681200	Active TSS	HUVEC	blood vessel
33	chr10:92680200-92681400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:92680200-92682200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
35	chr10:92680200-92682600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:92680200-92683200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
37	chr10:92680400-92680600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:92680400-92680600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:92680400-92680600	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr10:92680400-92680600	Active TSS	A549	lung
41	chr10:92680400-92680800	Weak transcription	Lung	lung
42	chr10:92680400-92680800	Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr10:92680400-92681000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:92680400-92681000	Enhancers	Fetal Muscle Trunk	muscle
45	chr10:92680400-92681200	Active TSS	Muscle Satellite Cultured Cells	--
46	chr10:92680400-92681200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:92680400-92681200	Active TSS	HSMM	muscle
48	chr10:92680400-92684400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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