Variant report

Variant	rs12241669
Chromosome Location	chr10:92634937-92634938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:92629379..92632289-chr10:92632395..92635365,2	K562	blood:
2	chr10:92631710..92635669-chr10:92637980..92642007,3	K562	blood:
3	chr10:92630242..92632289-chr10:92633679..92635365,2	K562	blood:
4	chr10:92634169..92636682-chr10:92637980..92640024,2	K562	blood:
5	chr10:92633775..92636007-chr10:92639498..92641051,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148688	Chromatin interaction
ENSG00000222305	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10748555	0.84[YRI][hapmap]
rs10881829	0.91[YRI][hapmap]
rs10881833	0.88[YRI][hapmap]
rs10881835	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11186298	0.91[YRI][hapmap]
rs11186333	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11186346	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11186369	0.84[YRI][hapmap]
rs11498507	0.88[AFR][1000 genomes]
rs11527868	0.84[YRI][hapmap]
rs12244068	1.00[YRI][hapmap]
rs12246586	0.88[AFR][1000 genomes]
rs12261388	1.00[YRI][hapmap]
rs73315626	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632400-92647800	Weak transcription	Aorta	Aorta
2	chr10:92632600-92638200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:92632800-92635400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:92632800-92635400	Weak transcription	Fetal Intestine Large	intestine
5	chr10:92632800-92635400	Weak transcription	Fetal Kidney	kidney
6	chr10:92632800-92635400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:92632800-92635400	Weak transcription	Placenta	Placenta
8	chr10:92632800-92635600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:92632800-92635600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:92632800-92635800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:92632800-92635800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:92632800-92635800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:92632800-92635800	Weak transcription	Left Ventricle	heart
14	chr10:92632800-92635800	Weak transcription	Lung	lung
15	chr10:92632800-92635800	Weak transcription	Pancreas	Pancrea
16	chr10:92632800-92636000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:92632800-92636000	Weak transcription	Brain Anterior Caudate	brain
18	chr10:92632800-92636000	Weak transcription	Brain Substantia Nigra	brain
19	chr10:92632800-92636000	Weak transcription	Ovary	ovary
20	chr10:92632800-92636000	Weak transcription	Spleen	Spleen
21	chr10:92632800-92646000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:92632800-92646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:92632800-92647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:92632800-92647800	Weak transcription	Gastric	stomach
25	chr10:92632800-92651000	Weak transcription	Psoas Muscle	Psoas
26	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
27	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
29	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
30	chr10:92633000-92635200	Weak transcription	Fetal Thymus	thymus
31	chr10:92633000-92635400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:92633000-92635400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:92633000-92635400	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:92633000-92635400	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:92633000-92635400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:92633000-92635600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:92633000-92635800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:92633000-92636000	Weak transcription	NHDF-Ad	bronchial
39	chr10:92633000-92636200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:92633000-92636600	Weak transcription	Fetal Intestine Small	intestine
41	chr10:92633000-92637800	Weak transcription	HSMMtube	muscle
42	chr10:92633000-92640400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr10:92633000-92640600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr10:92633200-92635000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:92633200-92635200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr10:92633200-92635400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:92633200-92635400	Weak transcription	Primary B cells from cord blood	blood
48	chr10:92633200-92635800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:92633200-92636000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr10:92633200-92644000	Weak transcription	NHLF	lung

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