Variant report

Variant	rs10748555
Chromosome Location	chr10:92682060-92682061
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509613	0.85[CEU][hapmap]
rs10881835	0.82[YRI][hapmap]
rs10881847	0.85[CEU][hapmap];0.89[TSI][hapmap]
rs11186333	0.84[YRI][hapmap]
rs11186346	0.83[YRI][hapmap]
rs11186369	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12241669	0.84[YRI][hapmap]
rs12261388	0.83[YRI][hapmap]
rs3939	0.85[CEU][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap]
rs4522081	0.86[YRI][hapmap]
rs6583736	0.81[CEU][hapmap];0.87[TSI][hapmap]
rs7082558	0.81[CEU][hapmap]
rs7101168	0.87[CEU][hapmap]
rs7919103	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10748555	LIPM	cis	cerebellum	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
2	chr10:92672800-92689000	Weak transcription	Fetal Thymus	thymus
3	chr10:92678400-92682200	Enhancers	NHDF-Ad	bronchial
4	chr10:92678600-92682800	Weak transcription	Dnd41	blood
5	chr10:92678600-92689400	Weak transcription	Fetal Lung	lung
6	chr10:92680200-92682200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr10:92680200-92682600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:92680200-92683200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr10:92680400-92684400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:92680800-92682200	Enhancers	NHLF	lung
11	chr10:92680800-92682600	Weak transcription	Right Ventricle	heart
12	chr10:92680800-92683600	Weak transcription	Right Atrium	heart
13	chr10:92681000-92682400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
14	chr10:92681000-92682600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:92681000-92682800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:92681000-92682800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:92681000-92683400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr10:92681000-92683800	Weak transcription	Psoas Muscle	Psoas
19	chr10:92681000-92684400	Weak transcription	Left Ventricle	heart
20	chr10:92681000-92689000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:92681000-92689000	Weak transcription	Lung	lung
22	chr10:92681200-92682200	Enhancers	Hela-S3	cervix
23	chr10:92681200-92682800	Enhancers	Fetal Heart	heart
24	chr10:92681200-92683000	Enhancers	HSMMtube	muscle
25	chr10:92681200-92690800	Weak transcription	Gastric	stomach
26	chr10:92681400-92682200	Enhancers	HepG2	liver
27	chr10:92681400-92683000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:92681400-92683000	Enhancers	HUVEC	blood vessel
29	chr10:92681400-92684200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:92681400-92685000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr10:92681400-92685000	Enhancers	HSMM	muscle
32	chr10:92681400-92687800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:92681600-92682200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:92681600-92683400	Enhancers	A549	lung
35	chr10:92681600-92688800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:92681600-92689600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:92681800-92682200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:92681800-92684400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:92681800-92689800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:92682000-92683600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:92682000-92683800	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:92682000-92689000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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