Variant report

Variant	rs7919103
Chromosome Location	chr10:92615185-92615186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10509613	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10748555	0.85[CEU][hapmap]
rs10881832	0.92[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881836	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881847	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881849	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186297	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs11186300	0.92[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs11186342	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186369	0.89[CEU][hapmap]
rs1274443	0.83[EUR][1000 genomes]
rs1274445	0.83[EUR][1000 genomes]
rs1274446	0.85[EUR][1000 genomes]
rs1274447	0.84[EUR][1000 genomes]
rs1274448	0.84[EUR][1000 genomes]
rs1342085	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1418212	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1935347	0.93[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs1954505	0.83[EUR][1000 genomes]
rs2420367	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs2795317	0.83[EUR][1000 genomes]
rs2800145	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs2800146	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs3939	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4113478	0.88[EUR][1000 genomes]
rs4471341	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4933194	0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs6583735	0.92[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583736	0.96[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7073423	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7082558	0.96[CEU][hapmap];0.86[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7101168	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7900386	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7903572	0.92[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs7916848	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9420571	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9420572	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92597800-92616200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:92614400-92615800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr10:92614400-92618600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr10:92614400-92618800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr10:92614400-92619000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:92614800-92615200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:92614800-92615200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:92614800-92616000	Active TSS	H1 Cell Line	embryonic stem cell
9	chr10:92614800-92616000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:92614800-92616000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:92614800-92618600	Bivalent/Poised TSS	Fetal Brain Female	brain
12	chr10:92614800-92619200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr10:92615000-92615200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:92615000-92615200	Active TSS	HMEC	breast
15	chr10:92615000-92615400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
16	chr10:92615000-92615600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr10:92615000-92615800	Enhancers	Osteobl	bone
18	chr10:92615000-92616400	Flanking Active TSS	NHEK	skin
19	chr10:92615000-92618200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell

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