Variant report

Variant	rs10881849
Chromosome Location	chr10:92669319-92669320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:92668835..92671197-chr10:92756452..92758146,2	K562	blood:
2	chr10:92667826..92669650-chr10:92671220..92673051,2	K562	blood:
3	chr10:92667885..92670483-chr10:92979260..92981287,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180628	Chromatin interaction
ENSG00000273124	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10509613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881832	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10881836	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186297	0.82[EUR][1000 genomes]
rs11186300	0.81[EUR][1000 genomes]
rs11186342	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1274446	0.82[EUR][1000 genomes]
rs1274447	0.80[EUR][1000 genomes]
rs1274448	0.81[EUR][1000 genomes]
rs1342085	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418212	0.85[EUR][1000 genomes]
rs1935347	0.82[EUR][1000 genomes]
rs1954505	0.80[EUR][1000 genomes]
rs2420367	0.85[EUR][1000 genomes]
rs3939	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4113478	0.85[EUR][1000 genomes]
rs4471341	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4933194	0.81[EUR][1000 genomes]
rs6583735	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583736	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7073423	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7082558	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7101168	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7900386	0.81[EUR][1000 genomes]
rs7903572	0.81[EUR][1000 genomes]
rs7916848	0.82[EUR][1000 genomes]
rs7919103	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9420571	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9420572	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92636800-92671600	Weak transcription	Fetal Brain Male	brain
2	chr10:92640800-92671600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:92646800-92676800	Weak transcription	Right Ventricle	heart
4	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
5	chr10:92648600-92669600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:92648600-92671600	Weak transcription	Fetal Intestine Small	intestine
7	chr10:92648600-92675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:92648600-92679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea
10	chr10:92649200-92675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:92649600-92671200	Weak transcription	Hela-S3	cervix
12	chr10:92651400-92675000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:92651600-92671600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:92652000-92670200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:92652400-92679400	Weak transcription	Psoas Muscle	Psoas
16	chr10:92653400-92671600	Weak transcription	Brain Angular Gyrus	brain
17	chr10:92653600-92669400	Weak transcription	K562	blood
18	chr10:92653600-92671600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:92653600-92671800	Weak transcription	HSMMtube	muscle
20	chr10:92653800-92671400	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:92654000-92670600	Weak transcription	Ovary	ovary
22	chr10:92654400-92672200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:92654600-92670400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:92654600-92675000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:92654800-92671600	Weak transcription	Fetal Kidney	kidney
26	chr10:92654800-92674000	Weak transcription	Fetal Heart	heart
27	chr10:92656200-92669600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:92656400-92671400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr10:92656400-92678400	Weak transcription	NHDF-Ad	bronchial
30	chr10:92657200-92671600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr10:92658200-92676800	Weak transcription	NH-A	brain
32	chr10:92658800-92671600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:92659600-92671600	Weak transcription	HepG2	liver
34	chr10:92660600-92671600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:92660800-92669400	Weak transcription	Primary B cells from cord blood	blood
36	chr10:92660800-92671600	Weak transcription	Osteobl	bone
37	chr10:92661000-92671600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:92661000-92680000	Weak transcription	Placenta	Placenta
39	chr10:92661200-92671600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr10:92661400-92669400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr10:92661400-92671200	Weak transcription	Brain Anterior Caudate	brain
42	chr10:92661400-92671600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr10:92662600-92671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:92663200-92671400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr10:92663400-92669800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:92663400-92671600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:92663400-92671600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr10:92663400-92671600	Weak transcription	Liver	Liver
49	chr10:92663400-92671600	Weak transcription	Brain Germinal Matrix	brain
50	chr10:92663400-92671600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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