Variant report

Variant	rs7101168
Chromosome Location	chr10:92633561-92633562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr10:92633494-92633606	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92629379..92632289-chr10:92632395..92635365,2	K562	blood:
2	chr10:92631710..92635669-chr10:92637980..92642007,3	K562	blood:

Variant related genes	Relation type
RPP30	TF binding region
ENSG00000222305	Chromatin interaction
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10509613	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10748555	0.87[CEU][hapmap]
rs10785975	0.88[JPT][hapmap]
rs10881832	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881836	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881847	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881849	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186297	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs11186300	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs11186342	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186369	0.88[CEU][hapmap]
rs1274443	0.81[EUR][1000 genomes]
rs1274445	0.81[EUR][1000 genomes]
rs1274446	0.84[EUR][1000 genomes]
rs1274447	0.82[EUR][1000 genomes]
rs1274448	0.83[EUR][1000 genomes]
rs1342085	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1418212	0.87[EUR][1000 genomes]
rs1935347	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1954505	0.82[EUR][1000 genomes]
rs2420367	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2795317	0.81[EUR][1000 genomes]
rs2800145	0.91[CEU][hapmap]
rs2800146	0.91[CEU][hapmap]
rs3939	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4113478	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4471341	0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4933194	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs6583735	0.91[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6583736	0.96[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7073423	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7082558	0.96[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7900386	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs7903572	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs7916848	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs7919103	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9420571	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9420572	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92631200-92634000	Active TSS	GM12878-XiMat	blood
2	chr10:92632200-92633600	Flanking Active TSS	Dnd41	blood
3	chr10:92632400-92633600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:92632400-92633600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:92632400-92633800	Enhancers	Stomach Mucosa	stomach
6	chr10:92632400-92634800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:92632400-92647800	Weak transcription	Aorta	Aorta
8	chr10:92632600-92633600	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:92632600-92633600	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr10:92632600-92633800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:92632600-92634200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:92632600-92634200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:92632600-92638200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:92632800-92633600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:92632800-92633600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr10:92632800-92633600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr10:92632800-92633600	Enhancers	Adipose Nuclei	Adipose
18	chr10:92632800-92633600	Enhancers	Thymus	Thymus
19	chr10:92632800-92633800	Enhancers	Primary T cells from cord blood	blood
20	chr10:92632800-92633800	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:92632800-92634000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:92632800-92634200	Enhancers	Brain Angular Gyrus	brain
23	chr10:92632800-92634600	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr10:92632800-92634600	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:92632800-92635400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:92632800-92635400	Weak transcription	Fetal Intestine Large	intestine
27	chr10:92632800-92635400	Weak transcription	Fetal Kidney	kidney
28	chr10:92632800-92635400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:92632800-92635400	Weak transcription	Placenta	Placenta
30	chr10:92632800-92635600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:92632800-92635600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:92632800-92635800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:92632800-92635800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:92632800-92635800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:92632800-92635800	Weak transcription	Left Ventricle	heart
36	chr10:92632800-92635800	Weak transcription	Lung	lung
37	chr10:92632800-92635800	Weak transcription	Pancreas	Pancrea
38	chr10:92632800-92636000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:92632800-92636000	Weak transcription	Brain Anterior Caudate	brain
40	chr10:92632800-92636000	Weak transcription	Brain Substantia Nigra	brain
41	chr10:92632800-92636000	Weak transcription	Ovary	ovary
42	chr10:92632800-92636000	Weak transcription	Spleen	Spleen
43	chr10:92632800-92646000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:92632800-92646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:92632800-92647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr10:92632800-92647800	Weak transcription	Gastric	stomach
47	chr10:92632800-92651000	Weak transcription	Psoas Muscle	Psoas
48	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
49	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus

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