Variant report

Variant	rs11186342
Chromosome Location	chr10:92630523-92630524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:92630500-92630650	NHLF	lung:	n/a	n/a
2	CTCF	chr10:92630522-92632407	A549	lung:	n/a	chr10:92631151-92631164 chr10:92631502-92631511 chr10:92631149-92631167 chr10:92631499-92631517 chr10:92631144-92631165 chr10:92631150-92631166
3	CTCF	chr10:92630520-92630670	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:92630242..92632289-chr10:92633679..92635365,2	K562	blood:
2	chr10:92629379..92632289-chr10:92632395..92635365,2	K562	blood:
3	chr10:92617446..92619942-chr10:92629114..92632072,2	K562	blood:
4	chr10:92621836..92625336-chr10:92628683..92630660,3	K562	blood:
5	chr10:91553518..91554077-chr10:92630267..92631189,3	MCF-7	breast:

Variant related genes	Relation type
RPP30	TF binding region
ENSG00000148680	Chromatin interaction
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10509613	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881832	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10881836	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10881847	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10881849	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186297	0.85[EUR][1000 genomes]
rs11186300	0.85[EUR][1000 genomes]
rs1274443	0.83[EUR][1000 genomes]
rs1274445	0.83[EUR][1000 genomes]
rs1274446	0.85[EUR][1000 genomes]
rs1274447	0.84[EUR][1000 genomes]
rs1274448	0.84[EUR][1000 genomes]
rs1342085	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1418212	0.89[EUR][1000 genomes]
rs1935347	0.86[EUR][1000 genomes]
rs1954505	0.83[EUR][1000 genomes]
rs2420367	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2795317	0.83[EUR][1000 genomes]
rs3939	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4113478	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4471341	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4933194	0.84[EUR][1000 genomes]
rs6583735	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6583736	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073423	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7082558	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7101168	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7900386	0.85[EUR][1000 genomes]
rs7903572	0.85[EUR][1000 genomes]
rs7916848	0.85[EUR][1000 genomes]
rs7919103	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9420571	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9420572	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92630400-92630600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:92630400-92630800	Enhancers	HepG2	liver
3	chr10:92630400-92631000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr10:92630400-92632600	Active TSS	Ovary	ovary
5	chr10:92630400-92633000	Active TSS	NHDF-Ad	bronchial

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