Variant report

Variant	rs12244642
Chromosome Location	chr10:24962025-24962026
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:24956641..24958420-chr10:24959878..24962745,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1002613	1.00[MEX][hapmap]
rs11014180	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11014192	1.00[ASN][1000 genomes]
rs1414459	1.00[JPT][hapmap]
rs74122833	0.81[AFR][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:24908400-24995400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:24932000-24972600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:24935400-24994000	Weak transcription	Hela-S3	cervix
4	chr10:24937600-24967400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:24940600-24962200	Weak transcription	HepG2	liver
6	chr10:24942000-24972400	Weak transcription	Small Intestine	intestine
7	chr10:24946200-25009000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:24948000-24967400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:24948000-24967800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:24948200-24967600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:24948200-24969400	Weak transcription	Fetal Kidney	kidney
12	chr10:24954400-24969600	Weak transcription	Osteobl	bone
13	chr10:24955000-24967200	Weak transcription	Fetal Brain Male	brain
14	chr10:24957400-24969400	Weak transcription	HUVEC	blood vessel
15	chr10:24957600-24962200	Weak transcription	Liver	Liver
16	chr10:24957600-24962400	Weak transcription	NH-A	brain
17	chr10:24957600-24962600	Weak transcription	Fetal Intestine Large	intestine
18	chr10:24957600-24967200	Weak transcription	Fetal Stomach	stomach
19	chr10:24957600-24967800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:24957600-24969400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:24957600-24969400	Weak transcription	Pancreas	Pancrea
22	chr10:24957600-24975000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:24957600-24975200	Weak transcription	Esophagus	oesophagus
24	chr10:24957600-24984600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:24957600-24990200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:24957600-24995800	Weak transcription	HSMM	muscle
27	chr10:24957600-24996000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:24958600-24963400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:24958600-24969400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:24958800-24964400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:24958800-24967200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:24958800-24967600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:24958800-24967600	Weak transcription	Fetal Lung	lung
34	chr10:24958800-24967800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:24958800-24968000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:24958800-24969200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:24958800-24969400	Weak transcription	Fetal Heart	heart
38	chr10:24958800-24969400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:24958800-24975600	Weak transcription	NHDF-Ad	bronchial
40	chr10:24958800-24983000	Weak transcription	Dnd41	blood
41	chr10:24959000-24967800	Weak transcription	A549	lung
42	chr10:24959200-24967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:24959200-24967800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:24959800-24962200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr10:24960000-24964200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr10:24960200-24964000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:24960200-24964200	Weak transcription	K562	blood
48	chr10:24960200-24967000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:24960200-24969400	Weak transcription	Ovary	ovary
50	chr10:24960200-24972600	Weak transcription	Right Atrium	heart

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