Variant report

Variant	rs12245234
Chromosome Location	chr10:21688333-21688334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21685726..21688565-chr10:21689801..21692612,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10047405	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11012685	1.00[TSI][hapmap]
rs11012731	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11012742	1.00[EUR][1000 genomes]
rs12245121	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12249032	1.00[EUR][1000 genomes]
rs12251567	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12251847	1.00[EUR][1000 genomes]
rs12260551	1.00[EUR][1000 genomes]
rs12262469	0.92[AMR][1000 genomes]
rs12266450	1.00[EUR][1000 genomes]
rs59876709	1.00[EUR][1000 genomes]
rs7076467	1.00[TSI][hapmap]
rs7083214	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7910760	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21678200-21692000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:21683400-21691200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:21683400-21691200	Weak transcription	Right Atrium	heart
4	chr10:21684200-21696000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:21687000-21692000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:21687200-21688800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:21687200-21689000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:21687200-21689200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:21687200-21689600	Enhancers	NH-A	brain
10	chr10:21687200-21690200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:21687200-21690200	Enhancers	HMEC	breast
12	chr10:21687200-21693000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:21687400-21689000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:21687600-21688400	Flanking Active TSS	NHDF-Ad	bronchial
15	chr10:21687600-21688600	Flanking Active TSS	Osteobl	bone
16	chr10:21687600-21688800	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:21687600-21688800	Enhancers	Hela-S3	cervix
18	chr10:21687600-21688800	Enhancers	HSMM	muscle
19	chr10:21687600-21689000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:21687600-21689000	Enhancers	Colon Smooth Muscle	Colon
21	chr10:21687600-21689000	Enhancers	Fetal Heart	heart
22	chr10:21687600-21689000	Flanking Active TSS	A549	lung
23	chr10:21687600-21689000	Enhancers	NHLF	lung
24	chr10:21687600-21689200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr10:21687600-21689200	Enhancers	Fetal Stomach	stomach
26	chr10:21687600-21689400	Enhancers	Fetal Kidney	kidney
27	chr10:21687600-21690200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:21687800-21688400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:21687800-21689000	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr10:21687800-21689600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:21687800-21689600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:21688000-21688400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:21688000-21688600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:21688000-21688800	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr10:21688000-21689000	Enhancers	Fetal Brain Male	brain
36	chr10:21688000-21689200	Enhancers	HSMMtube	muscle
37	chr10:21688000-21692200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:21688000-21693000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:21688200-21688400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:21688200-21688600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:21688200-21688600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:21688200-21688800	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr10:21688200-21688800	Enhancers	Fetal Brain Female	brain
44	chr10:21688200-21689000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:21688200-21689000	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr10:21688200-21689000	Enhancers	Brain Germinal Matrix	brain
47	chr10:21688200-21689000	Enhancers	Fetal Lung	lung
48	chr10:21688200-21689400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr10:21688200-21690200	Enhancers	NHEK	skin
50	chr10:21688200-21690600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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