Variant report

Variant	rs12251567
Chromosome Location	chr10:21691411-21691412
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21691395..21694221-chr10:21715267..21716830,2	MCF-7	breast:
2	chr10:21685726..21688565-chr10:21689801..21692612,2	MCF-7	breast:
3	chr10:21690682..21692820-chr10:21708808..21711419,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10047405	1.00[EUR][1000 genomes]
rs11012731	1.00[EUR][1000 genomes]
rs11012742	1.00[EUR][1000 genomes]
rs12245121	1.00[EUR][1000 genomes]
rs12245234	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249032	1.00[EUR][1000 genomes]
rs12251847	1.00[EUR][1000 genomes]
rs12260551	1.00[EUR][1000 genomes]
rs12262469	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266450	1.00[EUR][1000 genomes]
rs59876709	1.00[EUR][1000 genomes]
rs7083214	1.00[EUR][1000 genomes]
rs7910760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21678200-21692000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:21684200-21696000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:21687000-21692000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:21687200-21693000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:21688000-21692200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:21688000-21693000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:21688400-21692200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:21688400-21695400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:21688800-21691600	Weak transcription	Hela-S3	cervix
10	chr10:21689000-21691600	Weak transcription	Fetal Lung	lung
11	chr10:21689000-21692000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:21689000-21692400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:21689200-21692000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:21689200-21692600	Weak transcription	Placenta	Placenta
15	chr10:21689200-21695600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:21689600-21691600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:21689600-21692000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:21689800-21691600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:21690000-21693200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr10:21690200-21691600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:21690400-21692200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:21690800-21692000	Enhancers	Left Ventricle	heart
23	chr10:21691000-21692000	Enhancers	Fetal Muscle Leg	muscle
24	chr10:21691000-21692200	Enhancers	Fetal Stomach	stomach
25	chr10:21691200-21691600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:21691200-21691600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:21691200-21691800	Enhancers	Right Atrium	heart
28	chr10:21691200-21691800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:21691200-21692000	Enhancers	Fetal Muscle Trunk	muscle
30	chr10:21691200-21692200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:21691200-21692200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:21691200-21692200	Enhancers	NH-A	brain
33	chr10:21691200-21692200	Enhancers	NHDF-Ad	bronchial
34	chr10:21691200-21692200	Enhancers	NHLF	lung
35	chr10:21691200-21692800	Enhancers	A549	lung
36	chr10:21691200-21693000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:21691200-21693000	Enhancers	NHEK	skin
38	chr10:21691200-21693200	Enhancers	H1 Cell Line	embryonic stem cell
39	chr10:21691400-21691800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:21691400-21691800	Enhancers	Fetal Heart	heart
41	chr10:21691400-21691800	Enhancers	Ovary	ovary
42	chr10:21691400-21691800	Enhancers	HSMMtube	muscle
43	chr10:21691400-21691800	Enhancers	Osteobl	bone
44	chr10:21691400-21692000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:21691400-21692000	Enhancers	Muscle Satellite Cultured Cells	--
46	chr10:21691400-21692000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:21691400-21692400	Enhancers	HMEC	breast
48	chr10:21691400-21693000	Enhancers	Esophagus	oesophagus

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