Variant report

Variant	rs12246128
Chromosome Location	chr10:45790209-45790210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10159580	0.93[YRI][hapmap]
rs10793613	0.81[AFR][1000 genomes]
rs10900195	0.81[AFR][1000 genomes]
rs10900197	0.89[YRI][hapmap]
rs10900200	0.83[LWK][hapmap];0.90[YRI][hapmap]
rs11239417	0.85[AFR][1000 genomes]
rs11239424	0.85[AFR][1000 genomes]
rs11239426	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239429	0.82[AFR][1000 genomes]
rs11239432	0.81[AFR][1000 genomes]
rs11239433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239435	0.81[AFR][1000 genomes]
rs11522531	0.83[AFR][1000 genomes]
rs12146275	0.85[AFR][1000 genomes]
rs12243836	0.81[AFR][1000 genomes]
rs12250005	0.81[AFR][1000 genomes]
rs12267438	1.00[MEX][hapmap]
rs12268890	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs12358817	0.85[AFR][1000 genomes]
rs17157680	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17157697	0.90[YRI][hapmap]
rs17157699	1.00[YRI][hapmap]
rs57580056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7079686	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7085353	0.86[YRI][hapmap]
rs7098434	0.81[AFR][1000 genomes]
rs748126	0.85[AFR][1000 genomes]
rs7918528	0.83[AFR][1000 genomes]
rs9664826	0.81[AFR][1000 genomes]
rs9733175	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45789200-45790400	Enhancers	Brain Cingulate Gyrus	brain
2	chr10:45790000-45792400	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:45790000-45793200	Weak transcription	Brain Substantia Nigra	brain
4	chr10:45790000-45794000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:45790200-45794000	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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