Variant report

Variant	rs11239424
Chromosome Location	chr10:45792838-45792839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10159580	0.92[AFR][1000 genomes]
rs10508894	1.00[EUR][1000 genomes]
rs10793613	0.96[AFR][1000 genomes]
rs10900195	0.96[AFR][1000 genomes]
rs10900200	0.94[AFR][1000 genomes]
rs11239402	0.81[EUR][1000 genomes]
rs11239409	0.98[EUR][1000 genomes]
rs11239417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11239420	1.00[EUR][1000 genomes]
rs11239422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11239423	1.00[EUR][1000 genomes]
rs11239426	0.82[AFR][1000 genomes]
rs11239427	1.00[EUR][1000 genomes]
rs11239428	1.00[EUR][1000 genomes]
rs11239429	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11239430	0.94[EUR][1000 genomes]
rs11239432	0.96[AFR][1000 genomes]
rs11239433	0.81[AFR][1000 genomes]
rs11239435	0.96[AFR][1000 genomes]
rs11511611	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11522530	0.99[EUR][1000 genomes]
rs11522531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11523406	0.97[EUR][1000 genomes]
rs11523864	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12146275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12246128	0.85[AFR][1000 genomes]
rs12250005	0.96[AFR][1000 genomes]
rs12268890	0.96[AFR][1000 genomes]
rs12355274	1.00[EUR][1000 genomes]
rs12358817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12359672	1.00[EUR][1000 genomes]
rs17157680	0.82[AFR][1000 genomes]
rs17443340	0.82[EUR][1000 genomes]
rs57580056	0.81[AFR][1000 genomes]
rs7079686	0.82[AFR][1000 genomes]
rs7085353	0.88[AFR][1000 genomes]
rs7098434	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72784536	0.81[EUR][1000 genomes]
rs72784571	1.00[EUR][1000 genomes]
rs748126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs748127	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9664826	0.96[AFR][1000 genomes]
rs9733175	0.95[AFR][1000 genomes]
rs9733444	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11239424	ALOX5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45790000-45793200	Weak transcription	Brain Substantia Nigra	brain
2	chr10:45790000-45794000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:45790200-45794000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:45792600-45793400	Weak transcription	Brain Hippocampus Middle	brain

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