Variant report

Variant	rs11239409
Chromosome Location	chr10:45771408-45771409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10159580	1.00[ASN][1000 genomes]
rs10508894	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793613	1.00[ASN][1000 genomes]
rs10900195	1.00[ASN][1000 genomes]
rs10900200	1.00[ASN][1000 genomes]
rs10900209	1.00[ASN][1000 genomes]
rs11239398	1.00[ASN][1000 genomes]
rs11239402	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11239417	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239420	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239422	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239423	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239424	0.98[EUR][1000 genomes]
rs11239427	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239428	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239429	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239430	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239432	1.00[ASN][1000 genomes]
rs11239434	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11239435	1.00[ASN][1000 genomes]
rs11239437	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11239452	1.00[ASN][1000 genomes]
rs11239480	1.00[ASN][1000 genomes]
rs11239482	1.00[ASN][1000 genomes]
rs11239496	1.00[ASN][1000 genomes]
rs11239501	1.00[ASN][1000 genomes]
rs11239506	1.00[ASN][1000 genomes]
rs11239512	1.00[ASN][1000 genomes]
rs11239515	1.00[ASN][1000 genomes]
rs11239516	1.00[ASN][1000 genomes]
rs11239517	1.00[ASN][1000 genomes]
rs11239519	1.00[ASN][1000 genomes]
rs11239520	1.00[ASN][1000 genomes]
rs11511611	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11522530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11522531	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11522532	1.00[ASN][1000 genomes]
rs11523406	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11523407	1.00[ASN][1000 genomes]
rs11523864	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11523866	1.00[ASN][1000 genomes]
rs12146275	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250005	1.00[ASN][1000 genomes]
rs12256027	1.00[ASN][1000 genomes]
rs12268890	1.00[ASN][1000 genomes]
rs12355274	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12357069	1.00[ASN][1000 genomes]
rs12358110	1.00[ASN][1000 genomes]
rs12358817	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359547	1.00[ASN][1000 genomes]
rs12359672	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529828	1.00[ASN][1000 genomes]
rs1529829	1.00[ASN][1000 genomes]
rs17157583	1.00[ASN][1000 genomes]
rs17157619	1.00[ASN][1000 genomes]
rs17443340	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17444064	1.00[ASN][1000 genomes]
rs17520779	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17521948	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1815626	1.00[ASN][1000 genomes]
rs1968475	1.00[ASN][1000 genomes]
rs28485654	1.00[ASN][1000 genomes]
rs28688874	1.00[ASN][1000 genomes]
rs2871740	1.00[ASN][1000 genomes]
rs41526545	1.00[ASN][1000 genomes]
rs55963543	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6593484	1.00[ASN][1000 genomes]
rs7085353	1.00[ASN][1000 genomes]
rs7098434	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098888	1.00[ASN][1000 genomes]
rs72784518	1.00[ASN][1000 genomes]
rs72784536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72784538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72784571	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784580	0.90[AFR][1000 genomes]
rs72786508	1.00[ASN][1000 genomes]
rs72788095	1.00[ASN][1000 genomes]
rs72788096	1.00[ASN][1000 genomes]
rs72788101	1.00[ASN][1000 genomes]
rs72788102	1.00[ASN][1000 genomes]
rs72789705	1.00[ASN][1000 genomes]
rs72789735	1.00[ASN][1000 genomes]
rs748126	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748127	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898796	1.00[ASN][1000 genomes]
rs7907779	1.00[ASN][1000 genomes]
rs9664826	1.00[ASN][1000 genomes]
rs9731035	1.00[ASN][1000 genomes]
rs9733175	1.00[ASN][1000 genomes]
rs9733422	1.00[ASN][1000 genomes]
rs9733444	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11239409	ALOX5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45771400-45774400	Weak transcription	Fetal Intestine Small	intestine

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