Variant report

Variant	rs17520779
Chromosome Location	chr10:45739470-45739471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45718240..45721231-chr10:45739223..45741626,2	K562	blood:
2	chr10:45495768..45498548-chr10:45738192..45740894,2	K562	blood:
3	chr10:45736902..45739703-chr10:45871110..45872665,2	K562	blood:

Variant related genes	Relation type
ENSG00000165512	Chromatin interaction
ENSG00000165511	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10159580	1.00[ASN][1000 genomes]
rs10508894	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10793613	1.00[ASN][1000 genomes]
rs10900195	1.00[ASN][1000 genomes]
rs10900200	1.00[ASN][1000 genomes]
rs10900209	1.00[ASN][1000 genomes]
rs11239398	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239402	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239409	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11239417	1.00[ASN][1000 genomes]
rs11239420	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11239422	1.00[ASN][1000 genomes]
rs11239423	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11239427	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11239428	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11239429	1.00[ASN][1000 genomes]
rs11239430	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11239432	1.00[ASN][1000 genomes]
rs11239434	1.00[ASN][1000 genomes]
rs11239435	1.00[ASN][1000 genomes]
rs11239437	1.00[ASN][1000 genomes]
rs11239452	1.00[ASN][1000 genomes]
rs11239480	1.00[ASN][1000 genomes]
rs11239482	1.00[ASN][1000 genomes]
rs11239496	1.00[ASN][1000 genomes]
rs11239501	1.00[ASN][1000 genomes]
rs11239506	1.00[ASN][1000 genomes]
rs11239512	1.00[ASN][1000 genomes]
rs11511611	1.00[ASN][1000 genomes]
rs11522530	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11522531	1.00[ASN][1000 genomes]
rs11522532	1.00[ASN][1000 genomes]
rs11523406	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11523407	1.00[ASN][1000 genomes]
rs11523864	1.00[ASN][1000 genomes]
rs11523866	1.00[ASN][1000 genomes]
rs12146275	1.00[ASN][1000 genomes]
rs12250005	1.00[ASN][1000 genomes]
rs12256027	1.00[ASN][1000 genomes]
rs12268890	1.00[ASN][1000 genomes]
rs12354802	0.80[EUR][1000 genomes]
rs12355274	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12357069	1.00[ASN][1000 genomes]
rs12358110	1.00[ASN][1000 genomes]
rs12358817	1.00[ASN][1000 genomes]
rs12359547	1.00[ASN][1000 genomes]
rs12359672	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1529828	1.00[ASN][1000 genomes]
rs1529829	1.00[ASN][1000 genomes]
rs17157583	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17157619	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17443340	1.00[ASN][1000 genomes]
rs17444064	1.00[ASN][1000 genomes]
rs17521948	1.00[ASN][1000 genomes]
rs1815626	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1968475	1.00[ASN][1000 genomes]
rs28485654	1.00[ASN][1000 genomes]
rs28688874	1.00[ASN][1000 genomes]
rs2871740	1.00[ASN][1000 genomes]
rs41526545	1.00[ASN][1000 genomes]
rs55963543	1.00[ASN][1000 genomes]
rs6593484	1.00[ASN][1000 genomes]
rs7085353	1.00[ASN][1000 genomes]
rs7098434	1.00[ASN][1000 genomes]
rs7098888	1.00[ASN][1000 genomes]
rs72784518	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784536	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784538	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784571	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72786508	1.00[ASN][1000 genomes]
rs72788095	1.00[ASN][1000 genomes]
rs72788096	1.00[ASN][1000 genomes]
rs72788101	1.00[ASN][1000 genomes]
rs72788102	1.00[ASN][1000 genomes]
rs72789705	1.00[ASN][1000 genomes]
rs72789735	1.00[ASN][1000 genomes]
rs748126	1.00[ASN][1000 genomes]
rs748127	1.00[ASN][1000 genomes]
rs7895871	0.92[EUR][1000 genomes]
rs7898796	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907779	1.00[ASN][1000 genomes]
rs9664826	1.00[ASN][1000 genomes]
rs9731035	1.00[ASN][1000 genomes]
rs9733175	1.00[ASN][1000 genomes]
rs9733422	1.00[ASN][1000 genomes]
rs9733444	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17520779	ALOX5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45734800-45745400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr10:45738000-45744800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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