Variant report

Variant	rs7895871
Chromosome Location	chr10:45720383-45720384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11239396	0.82[EUR][1000 genomes]
rs11239398	0.95[EUR][1000 genomes]
rs11239402	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs12240850	0.82[ASN][1000 genomes]
rs12354802	0.82[EUR][1000 genomes]
rs17157583	0.97[EUR][1000 genomes]
rs17157619	0.95[EUR][1000 genomes]
rs17520779	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs1815626	0.97[EUR][1000 genomes]
rs3740100	0.98[ASN][1000 genomes]
rs72784518	0.97[EUR][1000 genomes]
rs72784536	0.90[EUR][1000 genomes]
rs72784538	0.89[EUR][1000 genomes]
rs7898796	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7895871	ALOX5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45720000-45720400	Bivalent Enhancer	K562	blood
2	chr10:45720200-45720400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:45720200-45720600	Flanking Active TSS	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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