Variant report

Variant	rs3740100
Chromosome Location	chr10:45736856-45736857
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12240850	0.84[ASN][1000 genomes]
rs12360024	0.90[AMR][1000 genomes]
rs12572281	1.00[EUR][1000 genomes]
rs12573085	1.00[EUR][1000 genomes]
rs12573214	1.00[EUR][1000 genomes]
rs12573617	1.00[EUR][1000 genomes]
rs12573631	1.00[EUR][1000 genomes]
rs34564821	1.00[EUR][1000 genomes]
rs3824611	1.00[EUR][1000 genomes]
rs7895871	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45732200-45737400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:45733600-45738200	Enhancers	Primary T cells from cord blood	blood
3	chr10:45734800-45745400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:45735800-45737000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:45735800-45737600	Weak transcription	HUVEC	blood vessel
6	chr10:45736600-45737000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:45736600-45737800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:45736600-45737800	Enhancers	Fetal Thymus	thymus
9	chr10:45736600-45738000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr10:45736600-45738000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:45736800-45737400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:45736800-45737600	Enhancers	Primary hematopoietic stem cells	blood
13	chr10:45736800-45738000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:45736800-45738000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:45736800-45738000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:45736800-45738200	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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